Mycobacterium haemophilum: B586_06195
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Entry
B586_06195 CDS
T04111
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mhad
Mycobacterium haemophilum
Pathway
mhad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mhad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B586_06195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhad03400
]
B586_06195
Enzymes [BR:
mhad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B586_06195
DNA repair and recombination proteins [BR:
mhad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B586_06195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKN16243
LinkDB
All DBs
Position
complement(3445649..3447928)
Genome browser
AA seq
759 aa
AA seq
DB search
MGSTAQPVTLTNADKVLYPATGTTKHDVFDYYTQIAEAMVPHLAGRPATRKRWPNGVDQP
SFFEKQLASSAPDWLPRASVTHRSGTTTYPIIDSPTALAWIAQQAALEVHVPQWRFVGDP
GRLQPGPATRLVFDLDPGDGVTMAQLAEVARAVRDLIADIGLTTFPLTSGSKGLHLYTPL
DQPVSSRGATVLAKHIAQQLEKAMPTLVTSIMTRKLRAGKVFVDWSQNSGSKTTIAPYSL
RGREHPTVAAPRSWEELDDPALCQLRYDEVLGRVAHDGDLLARLDAPDARVPSPDRLTKY
RSMRDASKTPEPISSTKPAKPATGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PDTPSVNHLAVHTEDHPLDYATFEGEIPKGEYGAGKVIVWDSGTYDTEKFRDSAEKGEVI
VTLHGSRITGRYALIQTDGDQWLAHRMKDQKVFAFDEIAPMLATHGSVATLKAGQWAFEG
KWDGYRLLIEADHGTVRLRSRSGRDVTAEYSQLRSLAADLTEHHVVLDGELVALNKSGVP
SFNEMQNRNHATRIEFWAFDLLYLDGRSLLRARYLDRRKLLETLATASSLIVPELLPGDG
AEALEYSRKHGWEGVVAKRRDSSYQPGRRSASWVKDKHWKTQEVVIGGWRAGEGGRSSGI
GALLMGIPAAGGLHFAGRVGTGFTGRDLTNLKKMLAPLRSDRSPFDDSLPARDARGVTFV
TPVLVGEVRYSGWTADNRLRQTSWRGLRPDKQPSEVVRE
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgggctcgacggcgcagccggtgacgctgaccaacgccgacaaggtgctgtacccggcg
accgggaccacaaagcacgacgtcttcgattactacacgcagatcgccgaggcgatggtg
ccgcatctcgccggacgtccggcgacccgtaagcgctggcccaacggggtcgaccaaccc
tcgttcttcgaaaagcagctggcgtcatcggcgccggactggctgccgcgcgccagcgtg
acccaccggtcgggaaccacgacctatccgattatcgacagccccaccgcgctggcctgg
atcgcgcagcaggccgcgctggaggtacatgtgccgcagtggcggttcgtcggagatccc
ggcaggttacaacctggcccggcgacccgattggtgttcgacctggaccccggtgacggc
gtgacaatggctcagctggccgaagtggcccgcgcggtccgggacctgatcgccgatatc
gggctgaccaccttcccgctcaccagcggcagcaaggggctgcacctctatacgccgctt
gaccagccggtgagcagccgaggcgccacggtgttggccaaacacattgcgcagcaactg
gaaaaggccatgcctaccctggtgacgtcgatcatgacgcgaaagttgcgggcggggaag
gtgtttgtggactggagccaaaacagcggctcgaagaccaccattgcgccgtactcgctg
cgcggccgagagcacccgaccgtcgcggcgccacgcagctgggaggaactcgacgatccc
gcgctatgccagctgcgctacgacgaggtacttggccgggtcgctcatgacggtgacctg
ctggcgcggctggacgccccggacgcccgagtgcccagcccggatcggctgaccaagtac
cgcagcatgcgcgacgcatcgaagactcccgaaccgatatcttcaacgaaaccggcgaaa
ccggcgactggccaaggcaatacgttcgtcatccaggagcaccacgcccgccgattgcac
tacgacttccggctggaacgagacggggtactggtgtcgtgggcggtgccgaaaaacctg
ccagacaccccgtcggtgaaccatctggcggtacacaccgaggatcatccgctggactac
gccacattcgagggtgagatcccgaaaggtgaatatggcgctggcaaggtgatcgtctgg
gactcgggaacctacgacaccgagaagttccgcgactccgctgaaaaaggggaggtcatc
gtcaccttgcatggcagccggatcaccgggcgctatgcgctgattcaaaccgacggcgac
cagtggctggcgcaccggatgaaggaccaaaaggtcttcgcgttcgacgagatcgccccc
atgctcgcgacgcacggttcggtggcgaccctgaaggcaggccagtgggcgttcgaaggc
aagtgggacggctaccgactcctgatcgaggctgaccacggtacggtacggttgcggtcc
cgcagtggacgtgacgttaccgcagaatattcacaattgcgttcactggcagccgatctc
accgaacaccacgtggtgctcgacggtgaactcgtcgctctcaacaaatccggtgtgccc
agcttcaacgagatgcagaaccgtaaccacgccacccgcatcgagttttgggcgttcgat
ttgctctatctagacggccgctcgctgcttcgggcgcgctaccttgaccggcgcaaactg
ttggaaaccttggccactgcaagcagtctcattgttcccgagctgctgcccggcgacggc
gccgaggctctcgagtactcacgcaagcacggctgggagggtgtggtcgccaagcggcgc
gactccagttatcagccgggccggcgctctgcgtcgtgggtcaaagacaaacactggaaa
acccaggaggtcgtcatcggtggctggcgcgctggggaaggcggacgtagcagtggcatc
ggtgcgctgctgatgggcatccccgctgctggcgggctgcatttcgccgggcgggtcggt
accggcttcactgggcgcgacctgaccaacctcaagaagatgctggcgccactgcgcagc
gaccgctctccgtttgatgactcgcttcccgcacgcgacgccagaggcgtgacgtttgtc
acgccggttttggtcggcgaggtgcgctatagcggatggaccgcggataaccggctgcgc
caaacgagctggcgtgggctgcgcccagacaagcaaccaagtgaggtggtgcgggaatga
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