Mycobacterium haemophilum: B586_06745
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Entry
B586_06745 CDS
T04111
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhad
Mycobacterium haemophilum
Pathway
mhad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B586_06745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhad03400
]
B586_06745
Enzymes [BR:
mhad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B586_06745
DNA repair and recombination proteins [BR:
mhad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B586_06745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AKN16322
LinkDB
All DBs
Position
complement(3327600..3331346)
Genome browser
AA seq
1248 aa
AA seq
DB search
MTAPGPACPDTPIAGLVELALTAPTFCQLIERAGARPAELSLVGPARVRLFAASALARLG
PLLVVTATGREADDLTAELRGVFGDAVAVFPSWETLPHERLSPGVDTVGTRLMVLRRLAH
PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVILSVGDETGFERVIARLVELAYTRVD
MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEVGVDTLVAV
ACRELLLSDDVRARAAELAAQHPAAEHAVTGNVSDMLAKLAEGIPVDGMEALLPVLRPDD
YALLTDQLAAGTPVLLCDPEKVRTRAADLIKTGREFLEASWSVAAMGADNPAPVDVEQLV
AIASAAEPGAAGRHSSNLGGSGFAELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAP
SARGHQHDIDGIFATLRAHVATGGYAAIVTPGTGTAHRVVERLAESDIPAAMLEPGAAPG
LGLQPGLVGVLKGPLLDGVVIPGANLVIITETDLTGSRATAVDGKRLAAKRRNTVDPLAL
TAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKKGGGGAKNTDKLYVPMDSLD
QLSRYVGGQAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFGPDTPW
QAEMEDAFGFTETVDQLTAITEVKADMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDG
KQVAVLVPTTLLADQHLQTFTDRMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDVVIG
THRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAG
IREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDQAAARV
RGLVPEARVVVAHGQMPEDLLEGTVQGFWNREYDILVCTTIVETGLDISNANTLIVERAD
TFGLSQLHQLRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKD
LEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTVVTPEEPKDVRIDLP
VDAHLPPDYIASDRLRLEGYRRLAAASSDAEVAAVVDELIDRYGALPEPAQRLVAVARLR
LLCRGSGIIEVTAASAATVRLSPLTLPDSAQVRLKRMYPGAQYRATTATVGVPIPRAGGV
GAPRIRDVELVQMVADLITALQGVPRKDIGITGPEPTSNESNEEQQVR
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcctgcttgcccagacaccccaatcgcggggctcgttgaattggcg
ctcaccgcaccgaccttctgccagctcatcgagcgcgcgggcgctcgaccggccgaattg
agcctggtcggccctgcccgggtgcggttgttcgccgccagcgcgctggctcggctgggt
cccttgctggtggtcaccgccaccggtcgcgaagccgacgaccttaccgccgagctgcgc
ggcgtcttcggcgacgccgtggcggtgttcccgtcctgggagacgctgccgcacgaacga
ctttcacctggcgttgacaccgtcggcactcggctgatggtgctgcgccggctagcccat
cccgacgatgcccggttgggtccacccctgcaggtggtggtgaccgcggtgcgctcgctg
ctgcagccgatgacagcgcagctgggcctggtggaacctgtcatcttgagcgtcggcgac
gagaccggttttgagcgggttatcgcgcgcctggtcgagctggcatacacccgggtggac
atggtcggccggcgcggcgaattcgctgtccgcggtgggattctcgacatcttcgccccg
accgccgaacatccggtgcgcgtcgagttctggggtgacgagattaccgagatgcggatg
ttttcggtggccgatcagcgctccattcccgaggtaggcgtcgacacgttggtcgcggtc
gcctgccgggaactgctgctcagcgacgacgtgcgggcgcgggccgccgagttggccgcg
cagcaccccgccgccgagcatgcggtcaccggcaacgtcagcgatatgctcgccaagctg
gccgaggggatcccggtggacgggatggaggcattgttgccggtgcttcgtcccgatgat
tacgcgctgctgaccgaccagctcgctgccggcacgccggtgttgctgtgcgacccggag
aaggtccgcacccgggccgccgatttgatcaagaccggccgagaattcctcgaggcgtcg
tggtcggtcgccgccatgggtgccgacaacccggcgcccgtcgacgtcgagcagctagtg
gcgatcgcaagcgcggcggagccgggcgcagcgggtcgccactcatccaacctgggcggg
tcggggttcgccgaattaggcgacgtgcaggccgccgccatccggtcgggtcatccgtgg
tggacgttgagccagctgtctgacgagtcggcgttggagcttgacatccgggcggcacct
tcggcgcgtgggcatcagcatgacatcgacggcatctttgcgacgctgcgtgcgcatgtc
gccaccggtggatacgccgcgatcgtcacgcccgggaccggaaccgcccatcgagtggtg
gagcgacttgccgagtccgacatcccggccgcgatgctggaaccgggcgcggctcccgga
ctcggcctgcaaccgggcctggtcggggtgctcaaaggtccgctgctcgatggtgtagtg
ataccgggcgccaacctggtgatcatcaccgaaaccgatctgaccggcagccgagcgacg
gccgtcgacggtaagcggctggcggccaagcggcgcaacaccgtcgacccgttggcactg
accgctggcgacctggtggtgcacgatcagcacggcatcggacggttcgtggagatggtc
gagcgcaccgttggcggggcccggcgcgagtacctggtgctggaatacgcctcggccaag
aaagggggtggcggggcgaaaaacactgacaagctgtatgtcccgatggactcgctggat
cagctgtcgcggtatgtcggcgggcaagcgccggcgctgagccggctcggcggcagcgac
tgggccaacaccaagaccaaggcccgccgcgcggtgcgggaaatcgcgggcgagttggtg
tcgctgtacgccaaacgccaggccagccccggccacgcgttcgggccggacacgccctgg
caggccgagatggaggacgcgttcggcttcaccgagaccgtcgaccagctcaccgcgatc
accgaggtcaaggccgacatggaaaagccggtgccgatggaccgggtgatctgcggcgac
gtcggctacggcaagaccgagatcgcggtgcgggcggcgttcaaggcggtgcaggacggc
aagcaggttgccgtgttggtgcccaccacgctgttggccgaccagcatctgcagacgttc
accgatcggatggccggattcccggtgaccgtcaaggggctgtcgcggttcaccgacgcc
gccgagtcccgcgcggtgatcgacggccttgccgaggggtcagtggacgtcgtgatcggc
acgcatcggctgctgcagactggggtgcgctggaaggatctgggcctggtcgtcgtcgac
gaggaacagcggttcggcgtcgagcacaaggagcacatcaagtcgctgcgcacccacgtc
gacgtgctgaccatgagcgccactccgatcccgcgcacgctggagatgagcttggccggg
attcgggagatgtcgacgatcctgaccccgcccgaagagcgctacccggtgttgacctac
gtcggcccgcacgatgacaagcaggtcgcggcggcgttacggcgcgagctgctgcgcgac
gggcaggcgttttacgtgcataaccgggtcagctccatcgatcaggctgccgcccgggtg
cgtggcctggtgcccgaagcgcgggtggtcgtcgcccacgggcagatgcccgaggatctg
ctggaaggcaccgtgcaggggttctggaaccgcgaatacgacatcttggtgtgcaccacg
atcgtggaaaccggcctggacatctccaacgccaacacgctcatcgtggagcgcgccgac
accttcgggctgtcccagctgcatcagctgcggggtcgggtcggccgtagccgcgagcgt
ggttacgcctacttcctctacccaccgcaggcgccgctgaccgagacggcctacgaccgg
ttggcgaccattgcgcagaacaacgagctgggcgcgggcatggcggtggcgctcaaggac
ttagagatccgcggcgccggcaatgtgctgggtatcgagcagtccgggcacgtcgccggt
gtcgggttcgacctgtacgtgcggttggtgggcgaggccgtcgaggcgtaccgagccgct
gccgacggcaaaaccgtcgttacgcccgaggagcccaaggatgtgcggatcgacttgccg
gtggatgcacacctgccgccggactacatcgccagcgaccggcttcgactcgagggctac
cggcgactggccgcggcatcatctgatgcagaggtcgcggccgttgtggacgagctcatc
gaccgctacggggcgctgccagaaccggcccagcggctggtggcggtggctcggttgcgg
ctactgtgccgcggctcgggcatcatcgaggtgaccgccgcgtcggccgcgaccgtgcgg
ctgtctcctttgacgctgccggattccgcccaagtgcggctcaagcggatgtatcccggc
gcgcagtaccgcgccaccacggccacggtcggagttcctatcccgcgagccggcggtgtc
ggcgctccgcgtatccgcgatgtggagttggtccagatggtggctgacttgattaccgcg
ctgcagggtgtaccgcggaaggacattggcataacgggaccagaaccgacatcgaatgag
tcgaatgaggagcaacaggttcgatga
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