Mannheimia haemolytica D171: J450_05040
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Entry
J450_05040 CDS
T02747
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mham
Mannheimia haemolytica D171
Pathway
mham03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mham00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
J450_05040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mham03400
]
J450_05040
Enzymes [BR:
mham01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
J450_05040
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
J450_05040
DNA repair and recombination proteins [BR:
mham03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
J450_05040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zinc-ribbons_6
Zn-ribbon_8
NFACT_N
DZR
RNHCP
Motif
Other DBs
NCBI-ProteinID:
AGQ38515
LinkDB
All DBs
Position
complement(1069049..1069873)
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AA seq
274 aa
AA seq
DB search
MPELPEVETSVRGVSPYLVGQTIEQIIVRQPKLRWAVSPELSQMAGAKITAVERRAKYLI
IRTDKGDILVHLGMSGSLRILSQTADIAFGKHDHIDLVTTNGTILRYNDPRKFGCWLWAE
KAEDHELLRKLGPEPLSNDFTADYLFAKSRKKTTACKTFIMTNEVVVGVGNIYACESLFM
AGIHPELAAQNLTKKQCERLVKTIKEVLTKAIIQGGTTLKDFIQPDGKPGYFSQVLQVYG
RKGEACNDCGKTIETKVIGQRNTYFCPKCQRLPK
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaagttgaaaccagcgttcgtggtgtatcgccctatttggttggg
caaactattgaacaaatcatcgttcgtcagccaaagttacgttgggcggtgagtcctgaa
ttaagccaaatggcaggggcaaaaattaccgcagtagaaagacgtgccaaatatctgatt
atccgcaccgacaaaggcgatattttggtgcatctaggaatgtccggctcgctcaggatt
ttgtctcaaaccgccgatatcgctttcggtaagcacgaccatatcgatttagtcaccacc
aatggcacaattttacgctacaacgaccctcgcaaattcggttgttggctatgggcagaa
aaagcagaagatcacgaactgttgcgtaaactcgggcctgaaccgctttcaaacgatttc
acagcagattacttatttgcaaaaagccgcaaaaaaacgaccgcttgtaaaacctttatt
atgactaatgaagtggttgttggggtggggaatatctatgcgtgcgaaagtttatttatg
gcaggcattcaccctgagcttgcagcacaaaacctgactaaaaaacagtgcgaacgttta
gtaaaaaccatcaaagaagtactaacgaaagcgattattcaaggcggcacaacactgaaa
gattttatccaacctgatggcaaaccgggctatttctctcaagtgttgcaagtgtatgga
agaaaaggggaagcctgtaatgactgcggaaagacaattgaaaccaaagtaatcgggcag
cgtaatacctatttttgcccgaagtgtcagagattgccgaaataa
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