Mariluticola halotolerans: L1P08_03330
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Entry
L1P08_03330 CDS
T09219
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhar
Mariluticola halotolerans
Pathway
mhar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L1P08_03330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhar03400
]
L1P08_03330 (mfd)
Enzymes [BR:
mhar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L1P08_03330 (mfd)
DNA repair and recombination proteins [BR:
mhar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L1P08_03330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
RecG_dom3_C
SNF2-rel_dom
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
UJQ95032
LinkDB
All DBs
Position
complement(706737..710258)
Genome browser
AA seq
1173 aa
AA seq
DB search
MNEVDLNMTATPSQMIVNVPDGMQPVVLARFVEQRIAEAPDDRVAAVFVARDGRRQSRME
EVLRQLMPGHPILGLPAWDCLPYDRVSPNAVAISARMSTLATLCNPNTRGAIVITTANAL
IQKLPPTDIVSAMSFGAASGEVVDSKTLIDWASGNGYLRVPTVREAGEYAVRGGLVDLFP
ASEDAPLRFDFFGAVLETIRSFDPDTQRTTGTLKRFALAPMSEVVLNEETIRRFRRNYTA
TFGGNTADDPLYAAISAGQRFPGMEHWLPFYYERLDPLVAYTGNAAFIYDHQIDQAFTER
QEQITDYFEARDEAMGKGQQPGGGAPYKAIKPELLYQVDAHPYALSAGVAVQLSPFTPAG
DAIPISDAGGRMAPSFAAEREAADSNIFEAVISLLKAEEKAGRHTILACWSEGTRDRMAQ
VLSDHGYTRLKLVSNWHEAETTAKGMTALLVLGLESGFRTDGLLVLSEQDILGERIIRQA
RRKKASDALTEATSLSAGDLVVHVDHGIGRFIGLRAIEAAGAPHDCVEIEYARGDKLYLP
VENIELLSRYGSEDTSAELDRLGGVAWQAKKSKLKKRIRDMAEQLIRVAAARAMSTVEPI
AMPTGAYDEFAARFPYEETEDQLVAIDTVVDDLTSGRVMDRLVCGDVGFGKTEVALRGAF
AMALAGRQVAVVVPTTLLARQHYKTFKERFAGLPVKIAQASRLVTAAEIKATKQGLANGD
VDIVVGTHALLAKNIEFRDLGLLIIDEEQHFGVSHKERLKELRDNVHVLTLTATPIPRTL
QLALTGVRDLSLLATPPVDRLAVRTFVTPFDPLTVREALLREKYRGGQAFYVVPRIKDQV
EVAEFLREQVPEVSYVVANGQMAPGQLDDIMNAFYDGKFDVLVATTIVESGLDIPNANTL
IVHRADQFGLAQLYQIRGRIGRSKIRAYALFTVPADRKLTDTAQRRLEVLQSLETLGAGF
QLASHDLDIRGAGNLLGDEQSGHIREVGFELYQAMLEEAVASLRAGETEGETEGEWSPQI
SLGMPVMIPEDYVSDLQVRMQLYRRLGDLSETRDIDEFGAELIDRFGPLPDEVEALLKIV
LVKSLCRRANVEKVDAGPKGVVISLRNNEFPNPGGLVRFVTDPAQAVRLKPDQKLVFARN
WPTADDRLRGAASILARLAKLAENGDSIATDAL
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagtcgacctgaacatgacggcaacaccaagccagatgatcgtcaatgtccct
gacggcatgcagccggtcgtcttggcgcgctttgtcgaacagcgcattgccgaagcgccg
gatgatcgcgtcgccgcagtcttcgttgcccgagacggacgccgccagtcgcggatggaa
gaggttttgcgccagctcatgcccggccatccgattctcggtctgccggcctgggattgt
ctgccctatgatcgcgtctcgcccaatgcggtggcgatttccgcgcgtatgagcacgctg
gccaccctttgcaatcccaatacacgcggcgcgattgtcatcacgaccgccaacgcgctg
atccagaaactgccgcccacagacatcgtcagcgccatgtcttttggtgccgcatcaggc
gaagtcgtcgacagcaaaaccctgatcgactgggcgtcgggcaatggctatttgcgcgtg
cccaccgtgcgcgaggccggtgaatatgcggtgcgtggcggtctggtcgatctgttcccg
gccagcgaagacgccccgctgcgctttgatttcttcggcgcggtgctggagacaattcgc
agctttgatcccgacacccagcgcaccaccggcaccctgaaacgtttcgcgctcgctccg
atgagcgaagttgtactcaacgaagaaaccatccgccggttccgccgcaattacaccgca
acctttggcggcaataccgccgatgatccgctctatgccgccatcagcgccggccagcgc
tttccaggcatggaacactggctgcccttttattatgagcgcctcgatccgctcgtcgcc
tataccggcaatgccgccttcatctacgaccaccagatcgaccaggccttcaccgagcgc
caggaacagatcaccgattatttcgaagcccgtgacgaagccatgggcaaggggcagcag
cccggcggcggcgcaccctacaaagccatcaagcccgaactgctctatcaggtcgatgcc
catccttacgccctgtctgcaggggttgccgtgcaactctcgccgttcacccctgcaggg
gatgccattccgataagtgatgccggcgggcggatggcccccagtttcgccgccgaacgc
gaagccgctgacagcaatatctttgaagcggtcatctcactgttaaaggccgaggaaaaa
gccgggcggcacaccattctcgcctgctggagcgagggcacgcgcgaccgcatggcccag
gtgctcagcgatcacggctatacccggttgaaactggtctccaactggcatgaggcggaa
accactgcgaagggcatgacggcgcttctggtccttgggctggaaagcggtttccgcacc
gacggtcttctggttctctccgagcaggatattctgggcgaacgcatcatccgccaggcc
cgccgcaaaaaggccagcgacgcgctgaccgaggccaccagcctgtctgccggtgatctg
gtggtgcatgtcgatcacggtatcggccggttcattgggctgcgcgccatcgaggctgca
ggcgcgccccatgattgcgtcgaaatcgaatatgcgcgcggcgacaagctttacctgccg
gttgaaaacatcgaattgctgtcccgctatggctctgaagataccagtgccgaactggac
cgcctcggcggcgtcgcctggcaggcaaaaaaatcaaaactcaaaaaacgcatccgcgac
atggccgaacagctcattcgggttgctgcagcgcgcgccatgtccacggtggaacccatc
gccatgccgacaggggcctatgatgaattcgcagcccgtttcccctacgaggaaaccgaa
gatcagcttgtcgccattgataccgtggtcgacgatctgacctctggccgggtgatggac
cgcctggtgtgcggcgacgtgggcttcggcaaaaccgaagtcgcattacgcggcgcgttc
gccatggcgcttgccggcaggcaggtcgcggtcgtcgtgccgacaacattgctcgcccgc
cagcattacaagaccttcaaggagcgctttgccggtctgccggtcaaaattgcccaggcc
tcgcgcctcgtcaccgcagccgaaatcaaggccaccaagcagggtctggccaatggcgat
gtggatatcgtggtcggcacccacgcgctgctggccaaaaatatcgaattccgcgatctc
ggcctgctgatcatcgatgaagagcagcatttcggcgtctctcacaaggagcggttgaag
gaattgcgcgacaatgtgcatgtgctgaccctgaccgcgaccccgattccgcgcacgctt
cagctggccctgaccggggtgcgcgacctgtcgctgctcgccaccccaccggtagaccgg
ctggccgtgcgcacctttgttaccccgttcgatccgctgaccgtgcgcgaagccctgttg
cgcgaaaaatatcgcggcgggcaggccttttatgtggtgccacgcatcaaggatcaggtg
gaagtcgctgaattcctgcgcgaacaggtgccggaagtctcctatgtcgtcgccaatggc
cagatggcgccgggccagctcgatgacatcatgaacgcgttttatgatggcaaattcgat
gtgctggtcgccacaaccatcgttgaatccggcctcgacattcccaatgccaacacgctg
attgttcatcgcgccgaccagttcggcctcgcccagctttatcagatccgggggcgcatt
ggccgctctaaaatccgcgcctatgcgctgttcaccgtgcccgccgaccgcaagctgacc
gatacagcgcaacgccgtcttgaagtgctgcaatcgctcgaaactttgggcgctggcttc
cagctcgccagccatgatctcgatattcgtggcgcgggcaatctgttgggtgacgagcag
tccggccatatccgtgaggttggctttgaactctatcaggccatgcttgaagaagctgtg
gccagcctgagggccggggagacagaaggcgaaaccgaaggtgaatggtcgccgcaaatt
tcgctcggcatgccggtgatgattcccgaggattatgtctcggatctgcaggtgcgcatg
cagctctatcgccgtttgggtgacctttcggaaacccgtgacatcgacgaattcggcgcg
gaactgatcgaccggttcggtcccttgcccgacgaggtcgaggcattgttaaagatcgtt
ctggtcaagtcgctttgccgccgtgccaatgtcgaaaaagtggatgccggaccgaagggc
gtggtcatttcgctgcgcaataatgagttcccaaatcccggcggtctggtacgttttgtc
accgatccggcacaggccgtgcgcctgaaaccggatcagaaactggttttcgcccgcaac
tggccaacagccgatgacagactgcgcggcgcggcctcaattcttgcccgcctggcaaaa
ttggcggaaaacggggattcgattgctaccgacgccctataa
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