Marinobacter nauticus ATCC 49840: MARHY1372
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Entry
MARHY1372 CDS
T02083
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhc
Marinobacter nauticus ATCC 49840
Pathway
mhc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MARHY1372 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhc03400
]
MARHY1372 (mfd)
Enzymes [BR:
mhc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MARHY1372 (mfd)
DNA repair and recombination proteins [BR:
mhc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MARHY1372 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CCG94850
UniProt:
H8WB54
LinkDB
All DBs
Position
complement(1422858..1426379)
Genome browser
AA seq
1173 aa
AA seq
DB search
MTKGQAHAPLIAPAAPEKAADHRKWGQLNGCADALAICESARAHKGLTLVITQSTSEAIQ
LEQSIRFFLGLPTDEDGATVSSDGIELLSLPDWETLPYDLFSPHQDITSRRIRSLHRLPG
TRHGILVVPARTLMHRLAPPSYLQGNTLLLEVGQTLDIDSWRMQLEAAGYHHTDNVYEHG
EYAVRGAILDIYPMGSNLPYRIDLFDDEIETLRTFDPETQRSIDKTERIELLPANEFPWH
KEARSGFRNRWFEYFPNADKDAPVYQDVTHGITPPGIEYYLPLFFDETATLFDYLPGSTL
VFTANGLNDAVNAFDAETRARYEDRRHDRLRPILPPSELFLQPDEVFGQLKHYPRITCSS
QAEDGAGASNCGTESLPDVAMDGRAADPAGRLKRFIQEFHGRILICAESSGRREALIDNL
ADHKLKLATVQSWSEFLENESTTLAITIAPLEQGMVLPGQNLALITETALFGERVLQRRR
RQKPTETDDAGYRDLSELRIGAPVVHIDHGVGRYKGLETLTAGGQSDEFLTLEYAGGSKL
YVPVSSLHLISRYAGTDEEHAPLHKLGTERWSNAKQKALEKIRDTAAELLDVYARREARK
GFQFEDPKEAYRAFAAGFPFEETPDQQVAIESVFEDMTSERPMDRLVCGDVGFGKTEVAM
RAAFLATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVTVELLSRFRSGSQTSKAITAI
EEGKADIVIGTHKLLQGDINFKNLGLVIIDEEHRFGVQQKEKLKSLRAEVDMLTLTATPI
PRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQHDDAMVKEAILREILRGGQVYFLHNDV
ATIEKTAEDLRKLIPEARVGVAHGQMRERQLEQIMSDFYHKRFNVLVCTTIVETGIDIPS
ANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAISADARKRLDAISESQDL
GAGFMLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIRDGRTPNAELPLS
HGTEMNLRIPALIPDDYLPDVHNRLMLYKRIASVKDREALKELQVEMIDRFGLLPAPAKN
LMRQAQLRLQAETLGIVKVDAGKEWVRLEFGATTPVDPLELVKKVQSAPDRYRLEGANSF
RFRLNDDSTDGKLDAIAAMLEELAPDKAPAKAS
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaggccaggcccacgccccgcttatcgcccccgctgcccctgaaaaggccgcc
gaccacagaaaatgggggcaactgaatggctgtgccgacgccctggccatctgcgagagc
gcccgcgcccacaaaggtctgacactggtcatcacccaaagtaccagcgaagccatccag
ctggagcaatccatccggtttttcctggggctgcccacggatgaagacggcgccaccgtt
tcctccgatggcattgagcttttgtcgctccccgactgggaaacactgccctacgatctg
ttttcgccacaccaggacattacctcgaggcggattcgctccctgcaccggttacccggc
acacgccacggcattctggtagtaccggcacgcaccctgatgcaccggcttgcccccccg
agctatctgcagggtaataccctgctgctggaagtgggccagaccctggatatcgacagc
tggcgaatgcaactggaggcagccggttatcatcataccgacaacgtgtatgaacacggc
gagtatgcggtacggggggccatcctcgacatttaccccatgggctctaacctgccctac
cgcattgatctgttcgatgacgaaatcgaaaccctccggacctttgacccggaaacccag
agatccatcgataaaaccgaacgcatcgaacttctgccagccaacgaatttccctggcac
aaggaagcccgctcaggctttcgcaatcgctggtttgaatatttccccaatgccgacaaa
gacgcgccggtttaccaggatgttacccacggcatcacaccgcctggcattgagtactat
cttccactgtttttcgatgaaaccgccacgctgtttgattatctgccgggcagcaccctg
gtattcaccgccaacggtctcaatgatgccgtcaatgcctttgatgcggaaacccgggcc
cgttacgaagaccgccgtcacgatcgcctgcgccctattctgcccccctccgagctgttt
ctgcagccggatgaagtgttcgggcaactcaaacactacccccgcattacctgcagcagt
caggccgaagacggcgcgggcgccagcaactgcggtaccgaatctctcccggatgtcgcc
atggacgggcgcgccgctgatccggcagggcgtctcaaacggttcattcaggagttccac
gggcgcatcctgatctgtgctgaatcgtccgggcgccgggaggcgctgattgacaacctg
gccgatcacaagctcaagctggcaaccgtgcagagctggtcggaattcctcgaaaacgag
agcaccactctggccatcaccattgccccactggaacagggcatggtgttgcccggccag
aatctggcactgattaccgaaacggcgttgtttggcgagcgggtgctgcagcgtcgccgg
cgccagaaaccaaccgaaaccgacgatgccggctaccgggacctgtctgaactgagaatt
ggcgcaccggtcgtgcatatcgaccatggcgtagggcgctacaaggggctggagacactc
accgccggcggccaatccgacgaattcctgaccctggaatacgccggcggctccaaactc
tatgtaccggtgtccagcctgcacctgatttcccgttacgccggcaccgatgaggaacac
gcaccgctccacaagctcggaacagaacgctggagcaacgccaagcaaaaagcgctggaa
aaaatccgcgacaccgccgcagaactgctggatgtttacgcccgccgggaagcccggaaa
ggcttccagtttgaggacccgaaagaggcctatcgggcctttgctgccggcttcccgttt
gaggagacgccggaccaacaggtggccatcgaatcggtgttcgaggatatgacgagcgaa
cgcccgatggaccggctggtatgcggcgatgtcggcttcggtaaaaccgaagtcgccatg
cgcgcagcttttctggccacatggtctggcaaacaggtggccgtgctagtacccactact
cttctggcccagcaacattacgagtcgttccgtgaccggttctcggatacgccggtaact
gtagagcttctgagtcggttccgcagcggcagccagaccagcaaggccatcaccgccata
gaggaaggcaaggcagatatcgtcattggcacccacaagcttctgcaaggcgatatcaac
ttcaagaatctggggctggtgattatcgacgaagaacaccggtttggcgttcagcagaag
gaaaaactgaaatccctgcgggccgaggtggatatgctgaccctcaccgccacaccgatt
cccagaaccctgaacatggccatgggccacctgcgcgacctgtccattatcgccacccca
ccagcccgccgactgtcggtgaaaacctttgtgcgccagcacgacgacgccatggtgaaa
gaagcgattctgcgggaaatcctgcggggcggtcaggtctatttcctgcacaacgatgtc
gccaccatcgagaaaaccgcggaagatctgcgcaaactgatccccgaggcgcgggtgggt
gtggcacacggccagatgcgcgagcgccagctggaacagatcatgtcggatttctaccac
aagcgtttcaacgtactggtgtgcaccactattgtggaaaccggcatcgacatccccagc
gccaacaccattattattgaacgggcagacaaatttggcctggcgcagctgcaccagctt
cggggtcgcgtgggcaggtctcatcaccaggcgtacgcctatctgctgacaccaccgcca
aaggccatttccgccgatgccaggaagcgactggatgcgatttccgaatcccaggacctg
ggcgcaggcttcatgctggccacccacgacctggaaatccggggcgctggcgagctgctg
ggtgaagaacagagcggtcagatcgaaagcatcggctttaccctctacatgcagctgctg
gacgaagccgtaaaagcgattcgcgacggccgcacgcccaacgccgagctgcctctcagc
catggcaccgaaatgaacctgcgcattccggccctgattcccgacgactacctgccagat
gtccacaaccgcctgatgctgtacaagcgtattgccagcgtgaaggatcgtgaggcatta
aaagaacttcaggttgagatgattgaccgcttcggattattaccagccccggccaagaac
ctcatgcgccaggcacagctacgtttgcaggcagagactctgggcatcgtgaaagtggat
gccggcaaggaatgggtgcggcttgagttcggggcaacgacaccggtcgaccctctcgaa
ctggttaaaaaagtgcaatccgctccagatcgataccggctcgaaggcgccaacagcttt
cgcttccggctgaatgatgactcaaccgatggtaaactcgacgccatcgcagcgatgctc
gaagaactggcgcccgacaaggccccggcaaaggcatcgtga
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integrated database retrieval system
