Marinithermus hydrothermalis: Marky_1239
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Entry
Marky_1239 CDS
T01457
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhd
Marinithermus hydrothermalis
Pathway
mhd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Marky_1239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhd03400
]
Marky_1239
Enzymes [BR:
mhd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Marky_1239
DNA repair and recombination proteins [BR:
mhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Marky_1239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
AAA_22
UvrB_inter
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEB11979
UniProt:
F2NQP1
LinkDB
All DBs
Position
complement(1231061..1234018)
Genome browser
AA seq
985 aa
AA seq
DB search
MDPNPVLHRVLDRYVPSLPQVARAYLWANLPAPAVLIAPQERLKHYQDLAAFGRTVYVNP
GLEAVGEVGHYLFSFEAALRPFPKDPDAWRIVLEVGRTYLRDALLDRLERLGYGRDGDYR
VLGEVLEVGEARLEFFGDVLERVLVRGKPQARYVLPARPGKAEAWDSVVVAHFPGPVLLD
WPALAPPELWPALEGRNLIAFGRGGPELPAVHLPFEPLSPYRAQLSRFARDVRAWLGEGR
QVVFFYRHERSRDYLIERHFQDVPHRIQNAVRSFDGLLFVPGAFEGGFVHREEGRVYVTE
ELLYSFSGAARLRGRRLVGREVADPDALSEGDYLIHPEHGIGRFLGIETREVLGVKRDYL
VLQYAGDGRLYLPIEQLSLLRRHPGTTDDPPRLSRLGKNEWARAKAKAQKDAEALAQRLL
VLHAKREATPGYAFTPLPDWDPLIEKNFPYTLTPDQKRALEETLKDLETPRPMDRLISGD
VGFGKTEVALRAAHRVVGHGKQVAFLVPTTLLAQQHYETFCARFRDLPVSIGMLSRFTSA
REERRVLEGLKRGAVDIVIGTHRLLSADVAFRDLGLLIIDEEHRFGVAQKERLKELREGV
DVLTLSATPIPRTLYQALVGLKDVSSIQTPPPGRKPIRTILAPFDPALVREAVMFEIERG
GKAFYVHDRVASIAQRAKYLEALIPEARIGVVHGQMPEDEIEEVMFLFQEGAFDLLVATT
IVESGLDIPEANTILIERADKLGLANLYQLRGRVGRREKEAYAYLFHPPKLTEAAERRLA
AIADLSDLGSGHLLAEKDMEIRGVGNLLGPEQHGHIRAVSFEVYTELLAEAVRKLKGEAA
TPQKRVTLDLAVSARLVPEYIPDAAARSRYYGKFAELQSLAELARLVRELKARYGPPPRE
VEHFFALTRLRLLAEKKGVLSITEDLTHIQVVMGRWPLDYDARGLRSFPQRVEVTQHPPG
FRVEKKGLEPGQYPQVLMDLLYLVG
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
gtggatccgaatcccgtgctgcaccgcgtcctggatcgttacgtaccgagcctgccgcag
gtcgcgcgggcctacctgtgggccaaccttcctgcccccgcggtgctcatcgctccccaa
gagcgcctcaagcactaccaggaccttgcggcgttcggccggacggtatacgtcaatccg
ggcctcgaggccgtgggggaggtagggcattacctcttttccttcgaggcggcgcttcgc
cctttccccaaggacccggacgcttggcgcatcgtcctggaggtgggccggacctacctg
cgggacgcgcttcttgaccgcctcgagcgactagggtacggccgagatggggattaccgc
gtgttgggggaggtgctcgaggtcggggaggcgcggctcgagttcttcggggacgtgctg
gagcgcgtgctcgtgcggggtaagccccaggcgcggtacgtgcttcccgcccggcctggg
aaggccgaagcgtgggattccgtggtggtcgcgcactttcccggtccggtgctgctcgac
tggccggccttagcgccccccgagctgtggccggccttggagggccggaacctgatcgcg
tttggccgcggagggccggagcttcccgcggtgcacctgccgttcgagcctttgagcccg
taccgcgcgcagctctcgcgtttcgcgcgggacgtgcgggcctggcttggggaggggcgg
caggtggtcttcttctaccggcacgagcggagccgggactacctgatcgaacggcatttt
caggacgtgccgcaccgaattcaaaacgcggtgcgctcctttgacggcctcctcttcgtc
ccgggagccttcgagggcgggttcgtgcatcgggaggagggccgggtttacgtcacggag
gagctgctgtatagcttcagcggagccgcgcggcttcgcgggcggcgcctcgtgggccgg
gaggtcgcggaccccgacgccctcagcgaaggggattacctgatccaccccgagcacggg
atcgggcgttttctggggatcgagacccgcgaggtcctcggcgtaaagcgggactacctg
gtgctgcagtacgcgggggacggccggttgtacctacccatcgagcagctgtccctcttg
cgccgccacccgggcaccaccgacgacccgccccggctttcgcgcctcggcaagaacgag
tgggcccgggccaaggccaaagcccaaaaggacgcggaggccctggcgcaacgcctgctg
gtgctgcacgcgaagcgcgaggccacgccggggtacgcgttcacgccgcttccggactgg
gaccctctcatcgagaagaacttcccctacacgctcacaccggaccagaaacgcgctctc
gaggaaaccctcaaggacctcgagaccccccgccccatggaccggctcatctcgggggac
gtggggttcggcaagacggaggtggccttgcgcgccgcgcaccgcgtggtgggccacggc
aagcaggtggcgtttctggtccccaccaccctcctggctcagcaacactacgagaccttt
tgcgcgcggttccgtgatttgccggtctcgatcgggatgctctcacgcttcaccagcgct
cgggaggagcggcgggtcctcgagggcttgaagcgcggcgcggtggatatcgtgatcggc
acgcaccgcctgctttccgcggacgttgcgttccgggacctgggcctcctcatcatcgac
gaggaacaccggttcggcgtcgcgcaaaaggaacggctgaaggagctgcgcgagggggtg
gatgtgctgacgctctccgccacgccgatcccccgcacgctgtaccaggcgctcgtgggc
ctcaaggacgtctcgagcatccagacgccgcccccgggacgcaaacccatccgcacgatc
ctggcccccttcgacccggccttggtccgcgaggcggtgatgttcgagattgagcggggc
ggaaaggcgttttacgtgcacgaccgggtcgcctcgatcgcgcagcgcgccaagtacctc
gaggccctcatccccgaggcccgtatcggggtggtgcacggccagatgccagaggacgag
atcgaggaggtgatgttcctcttccaggagggggcgttcgacctgctcgttgcgaccacg
atcgtggagtccggcctggacatccccgaggccaacacgatcctgatcgagcgggcggat
aagctgggcctcgcgaacctgtaccagcttcgggggcgcgtggggcgccgggagaaggag
gcgtacgcctacctcttccaccctcctaagctcacggaggctgcggagcgtcggctcgcg
gcgatcgcggacctttcggacctgggttcgggccacctcctcgcggagaaggacatggag
atccgcggggtggggaacctcttgggtcccgagcagcacgggcacatccgcgcggtgagc
ttcgaggtgtacacggagctcctcgccgaagccgtgcggaagctcaagggagaggccgcc
acgcctcaaaaacgcgtcacgctggacctcgcggtctccgcgcgcctcgtgcccgagtac
atccccgacgctgcggcgcgcagccggtactacggcaagttcgccgaactccagagcctg
gcggagctcgcgcgcctcgtccgcgagctcaaagcgcgctacggccccccaccccgggag
gtcgagcacttcttcgccctcacgcgcctccggcttctggctgagaagaaaggagtgctc
tcgatcaccgaggacctcacccacatccaggtcgtgatgggccgctggcccctcgactac
gacgcccgcggcctgcggagctttccccagcgggtggaggtgacccagcaccctccgggc
ttccgcgtggagaagaagggcctcgagcccggccagtaccctcaggtgctgatggacctc
ctgtacctcgtgggctaa
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