Mycobacterium heckeshornense: JMUB5695_01168
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Entry
JMUB5695_01168 CDS
T07325
Symbol
ligD_1
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mhek
Mycobacterium heckeshornense
Pathway
mhek03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mhek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JMUB5695_01168 (ligD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhek03400
]
JMUB5695_01168 (ligD_1)
Enzymes [BR:
mhek01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JMUB5695_01168 (ligD_1)
DNA repair and recombination proteins [BR:
mhek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JMUB5695_01168 (ligD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BCQ07746
LinkDB
All DBs
Position
1181542..1183845
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AA seq
767 aa
AA seq
DB search
MDSPRAWPSEPTARPRVKLTNPDKVLYPPAGRRRKPVTKAEVFDYYTGIAEVMVPHLAGR
PATRKRWPNGVQSPSFFEKQLASSAPQWLPRAAVRHSSGTTTYPIIDSTTGLAWIAQQAA
LEVHVPQWRFVAEWTRAGEELKPGPATRLVFDLDPGEGVTMRQLTDVARMIRDLIADIGL
TTFPVTSGSKGIHLYAPLDNPVSSRGAVVLAKRVAQQLEKTIPKLVTATMTKSVRAGKVF
VDWSQNNGSKTTIAPYSLRGRAQPTVAAPRAWEELDDPRLRQLRYDEVLERVSRDGDLLA
PVDADINVDRLARYRSMRNPSKTPEPVLNAKPAGGHNNRFVIQEHHARRLHYDFRLERDG
LLVSWAVPKNLPETTSVNHLAVHTEDHPLEYATFEGTIPKGEYGAGTVTIWDTGTYDTEK
FRDDEVIVNLHGSRISGRYALIRTSGDQWLAHRMKDQKTFEFDELTPMLATEGSVANLTA
DQWAFEGKWDGYRLLVEADHGRLRVRSRRGRDVTAEYPQLRALARDLADHHVVLDGEIVA
LDASGVPRFSEMQNRVRATRIEYWAFDLLYLDGRPLLRVKYHDRRKLLETLASGRALIVP
ELITGDGAAALHYSGTQGWEGVVAKKLDSTYQPGRRSMSWIKDKHWHTQEVVIGGWRAGE
GGRTSGIGSLLMGIPADGGLHFAGRVGTGFTERELTRLKKTLAPLQTDESPFNAPLPARD
AKGVTFVKPALVGEVRYSEWTSDGRLRQPSWRGLRPDKEPHQVVREE
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggattcgccgcgcgcttggccttccgagccgaccgcgcggccgcgggtgaagctgacc
aaccccgacaaggtgctctacccgcccgcgggccggcggcgaaaacccgtcaccaaggcc
gaggtgttcgactactacaccggcatcgccgaggtgatggtgccacacctcgccggacgc
ccagccacccgcaagcgctggcccaacggcgtgcagtcgccgtcgttcttcgaaaaacag
ctggcttcgtcggcgccacagtggttaccccgcgccgccgtgcggcactcctccgggacc
accacctacccgatcatcgacagcaccaccgggctggcctggatcgcccagcaggccgcg
ctggaggtacacgtgccgcagtggcgcttcgtcgccgagtggacccgcgccggcgaagaa
ctcaagccgggcccggcaacgcggttggtgttcgacctcgacccgggcgagggtgtgacg
atgcggcagctgaccgacgtggcacgcatgatacgggatctgattgccgacatcgggctc
accacgttcccggtcaccagcggcagcaagggcatacacctctatgctccgctggacaat
ccggtgagcagccgaggcgcggtggtgctggccaaacgtgttgcccagcaactagagaag
acgataccgaagttggtcacggcgacgatgaccaagagcgtgcgggcgggcaaggtgttc
gtcgactggagccagaacaacgggtcgaagaccacgatcgcgccgtattcgcttcgtggt
cgagcgcagccgaccgtggccgcgccgcgggcctgggaagaactcgacgatcccaggctt
cggcaactgcgctacgacgaggtgctggagcgggtgtcgcgcgacggtgacctgctggcg
cccgtcgatgccgacatcaacgtggatcggctcgccagataccgcagcatgcggaaccca
tcgaaaacgccagaaccggtgcttaatgccaaaccagctgggggacataacaataggttc
gtcattcaggaacaccatgcccgtcggctgcactacgacttccggctggagcgcgatggc
ctgctggtgtcgtgggcggtgcccaagaacctccccgagacgacatcggtcaaccatctt
gcggtgcacaccgaggaccatccgttggagtacgcaacgttcgaaggcaccatcccgaag
ggcgagtatggggccggcacggtgactatctgggatacgggcacctacgacaccgagaaa
ttccgcgacgacgaggtcatcgtcaacctgcacggcagccggatttccggccgctacgcg
ctgattcgaacctccggcgaccaatggctggcgcaccgcatgaaagaccagaaaaccttc
gagttcgacgagctcaccccgatgctcgccaccgagggctcggtggccaacttgacggcg
gaccagtgggcgttcgagggcaagtgggacggctaccggctgctcgtcgaggccgaccac
ggcaggttgcgggtgcggtcgcgccgcggacgcgacgtcaccgccgagtatccccaattg
cgcgcgctggcccgcgatctcgccgaccaccacgtggtgctcgacggcgagatcgtggcg
ctggacgcatccggggtcccgagattttcggagatgcaaaaccgggtgcgggccactcgc
atcgaatactgggctttcgacctgctctacctggatgggcgaccgctgctgcgcgtcaaa
taccacgacaggcgcaagctgctggaaaccctggccagcggccgggcactcattgtcccc
gagctgataacgggcgacggtgctgccgcgctgcactactcgggcacccagggctgggag
ggagtcgtggccaagaaactcgactcgacatatcagccgggccgccgctcgatgtcatgg
atcaaggacaagcattggcacacacaggaagtggtgatcggcggctggcgtgccggtgag
ggtggtcgcaccagtggcatcgggtcactgctgatgggcatcccggccgacggtggcctg
catttcgcgggtcgggtcggtaccggcttcaccgaacgcgagctcactcgcctcaagaag
acgctggcgcccttgcaaaccgacgaatcccccttcaacgcaccccttcccgctcgtgac
gccaagggggtgacgttcgtgaagccggcgttggtcggcgaggtgcgctacagcgaatgg
acatcggacggccggctgcgccaacccagctggcggggactgcggccggacaaagagccg
caccaggtagtgcgagaggagtag
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