Mycolicibacter heraklionensis: K3U94_04785
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Entry
K3U94_04785 CDS
T07612
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mher
Mycolicibacter heraklionensis
Pathway
mher03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mher00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K3U94_04785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mher03400
]
K3U94_04785
Enzymes [BR:
mher01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K3U94_04785
DNA repair and recombination proteins [BR:
mher03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K3U94_04785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Big_4
Motif
Other DBs
NCBI-ProteinID:
QZA08615
UniProt:
A0A9X7ZH50
LinkDB
All DBs
Position
993522..995804
Genome browser
AA seq
760 aa
AA seq
DB search
MAAEPLRTRVKLTNADKVLYPATGTTKAEVFDYYTRIAEVMLPHIAGRPATRKRWPNGVE
QGSFFEKQLAASAPGWLARAEIQHRSGITTYPIIEDLDGLAWIAQQAALEVHVPQWRFEA
EWTHGGKVLKPGLATRLVFDLDPGEGVTMSQLAEVARAIRDLMSELGLETFPVTSGSKGV
HVYAALDRPVSSPGAATVAKRVAQQLESTLPKLVTATMAKKLRAGKVFVDWSQNNASKTT
IAPYSLRGRAHPMVAAPRTWAELDDPDLRQLRYDEVLDRVARDGDLLAELDRPLARHDRL
AVYRSKRDAGRTPEPVPDATPSPGEGNSFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PDTPSVNHLAVRTEDHPLEYGSFEGTIPKGEYGAGTVRIWDSGSYVTEKFEDTVEKGEVI
VVLAGSRISGRYALIRTGGDQWLAHRMKDQKAFTFNELAPMLATEGSVTRLDPSQWAFEG
KWDGYRLLVEADRGRIRLRARSGRDVTREYPHLPFPAADLAEHHVVLDGELVALDDSGVP
SFAEMQNNARSPRLEFWAFDLLYLDGRPLLRAAYRDRRRLLETLARGTDLVVKDLLTADG
DQALEQSRRLGWEGVVAKKWDSPYHPGRRSPAWVKAKRWRTQEVVIGGWRAGEGGRSGGI
GSLLMGIPEGDGLRFVGRVGTGFTDRNLAALKKMLMPLRTDESPFLAPLSRLDAKGVTFV
EPTVVGEVRFSERTTDGRLRQPSWRGLRPDKTPEEVVSED
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgagccgctccggacccgggtgaagctgaccaacgccgataaggtgctctac
cccgccacgggcaccaccaaggccgaggtcttcgactactacacccgcatcgccgaggtg
atgctgccgcacatcgcgggacgaccggcgacccgcaagcgctggcccaacggcgtcgag
cagggatccttcttcgaaaaacagctggccgcctcggcgccgggctggttggcccgcgcc
gagattcagcatcgctccggcatcaccacttacccgatcatcgaggacctcgacggcctg
gcctggatcgcccagcaggcggcgctggaagtccacgtgccgcagtggcgtttcgaggcg
gaatggacccacggcgggaaggtgctcaagcccgggctggcgacgcgtctggtgttcgac
ctcgaccccggcgagggcgtgacaatgagccaactcgctgaggtggcgcgcgccatccgg
gacctgatgtccgagcttggcctggagacgttcccggtcaccagcggcagcaagggcgtg
cacgtctacgccgcccttgatcgcccggtgagcagcccgggtgcggcgacggtggccaaa
agggttgcgcagcaactcgaaagcacactgccgaagctggtgaccgcgaccatggccaag
aaacttcgggccgggaaggtcttcgtcgactggagtcagaacaacgcgtcgaagaccacc
attgcgccctattcgctgcggggccgtgcccatccgatggttgccgcgccacgcacctgg
gcggagctggacgacccggacctgcggcagctgcgctacgacgaagtgctggaccgcgtc
gctcgcgacggcgatctgttggccgagctggaccggcccctggcccgacacgatcgactg
gccgtataccggtccaagcgtgacgcgggccgaactcccgaaccggtgccggacgcgacg
ccgtcgccgggggagggcaacagtttcgtcatccaggagcaccacgcccgccggctgcac
tacgacttccggctggaacgcgacggtgtgctggtgagctgggcggtgcccaagaatctg
ccggacacgccgtcggtcaaccatctcgcggtgcgcaccgaggaccacccgctggagtac
ggcagcttcgaaggcaccattcccaagggcgagtacggcgccggcacggttcgcatctgg
gactcgggcagctatgtcaccgagaagttcgaggacaccgtcgagaagggggaggtgatc
gtggtgctggccggcagccggatctccgggcgatacgcgctgatccgcaccggcggcgac
cagtggctggcgcatcggatgaaggaccagaaggcgtttaccttcaacgagttggccccg
atgctggccaccgagggttcggtgacccggctcgacccgagccagtgggccttcgagggc
aagtgggacggataccggctgctggtggaagccgaccgcggccggattcgactgcgcgct
cgcagtgggcgcgacgttacccgcgaatacccccacctgccgttcccggccgccgatctg
gccgagcatcacgtggtgctcgacggcgagctcgtcgcgctcgatgacagcggtgtcccc
agcttcgccgagatgcagaacaacgcccgctctcctcgtctggagttctgggccttcgac
ctgctctatctcgacggtcgcccactgctgcgcgcggcctaccgggatcgccgtcgcctg
ctggaaaccctcgcgcgaggaaccgatttggtggtcaaagacctgctgacagccgacggt
gaccaggcgctcgaacagtcccgccggctcggctgggagggcgttgtcgccaagaagtgg
gactcgccctaccacccggggcgccggtcgccggcgtgggtcaaggccaagcgctggcga
acccaggaagtggtgatcggcggttggcgggccggtgagggtggccgcagcggcgggatc
gggtccctgctgatgggtattcccgagggtgacggcctgcgtttcgtcggtcgggtcggc
accgggttcaccgaccgtaacctcgccgccctgaagaagatgttgatgccgctgcgcacc
gacgaatcaccttttctggcaccgctttcccggctggacgccaagggtgtcacgtttgtg
gaaccaaccgtggtgggggaggtgcgcttcagtgaacggacgacggatggtcggctgcgc
caacccagttggcgcggactgcggcctgacaagacccccgaggaggtcgtgagtgaggat
tga
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