Mycolicibacterium helvum: MHEL_33460
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Entry
MHEL_33460 CDS
T07064
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhev
Mycolicibacterium helvum
Pathway
mhev03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MHEL_33460 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhev03400
]
MHEL_33460 (mfd)
Enzymes [BR:
mhev01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MHEL_33460 (mfd)
DNA repair and recombination proteins [BR:
mhev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MHEL_33460 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
BBY65103
UniProt:
A0A7I7T8I8
LinkDB
All DBs
Position
3549401..3553063
Genome browser
AA seq
1220 aa
AA seq
DB search
MTAPGHPHVQTPIAGLVDLALTAPAFVELAQRATERPEELSLVGPASAQLYAACALARGA
PLLVVTATGREADDLTAELRGVFGDAAVMFPSWETLPHERLSPGVDTVGARLMVLYRLAH
PDDRRLGPALRVVVTTARSLLQPMAPDLADIEPVTLYVGAEFDFDALVARLVELAYSRVD
MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEITEIRMFAVADQRSIPEIEVGTVVAV
PCRELLLTDEVRARATKLIETRPLDDNHITGSVGEMLAKIAEGIPVDGMEALQPVLRPDE
LALLIDHLPADTPLLICDPEKVRTRAADLIATGREFLEATWSVAAIGGDAPIDVEQLGGS
GFRDLEDVREAARASNHPWWTLSQLAAEDAIELEVRTAPSARGQQSTVDEIFAMLRAHVL
TGGYGAVVAPGTGTAHRVVEQLGERDIPAGMLEPGEAPKQGVVGVLRGPLHDGIIVPGAN
LVVITETDLTGNRVAAPEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG
GARREYLVLEYGSSKRGQGADKLFVPMDSLDQLSRYVGGQEPSLSRLGGSDWTNTKTKAR
KAVREIASELVALYAKRQAAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKADMEK
PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARTAGFPV
TVKGLSRFTDPSESRAVVEGMADGSVDIVIGTHRLLQTAVRWKDLGLVIVDEEQRFGVEH
KEHIKALRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV
TAALRRELLRDGQVFYIHNRVASIDSAAARIRQLVPEARVVVAHGQMPEEQLERTVEGFW
NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPK
EMPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL
VGEAVEAYRAAADGQTVTTAEEPKDVRLELPVDAHLPPEYIASDRLRLEAYRRLAAATDD
AGIASVVEELTDRYGPLPEPAQRLLAVARLRMLCRGYGVTEVAATGSGSATTIRVSPLTL
PDSAQLRLKRVYPGAGYRATTSTVQVPIPRSGSGVGAPRIRDLELVQMVADLLLALDGQP
QGTVDITTFTPAGAQKGERR
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcacccgcatgtccagaccccgatagcggggctggtcgatttggcg
ctcaccgcgccggctttcgtcgaactcgcgcagcgcgccaccgagcgtcccgaagagctc
agcctggtcggcccggccagtgcacagttgtatgccgcgtgcgcgctggcccgcggcgcg
ccgctgctcgtggtgaccgcaacggggcgcgaggccgacgacctgaccgccgaactgcgc
ggtgtgttcggcgacgcggccgtgatgtttccgtcctgggagacgctgccccacgagcgg
ctgtctcccggcgttgacactgtgggtgcgcgcctgatggtgctgtaccggctggcgcac
cccgacgaccgccggctggggccggcactgcgtgtggtggtgacgacggcacgttcgctg
ctgcagccgatggccccggacttggccgatatcgagccggtgactctgtacgtcggcgcc
gagttcgatttcgacgccctggtggcgcgcctggtcgagctggcctactcccgcgtcgac
atggtcggcaaacgcggtgaattcgccgtccgcggcggcattctcgatgtgttcccgccg
accgccgaacatccggtccgggtggagttctggggcgacgagatcaccgagatacggatg
ttcgccgtcgccgaccaacgctcgatccccgagatcgaggtcggcacggtggtcgcggtg
ccctgccgtgagctgctgctgaccgacgaggtgcgagcccgtgccaccaagctcatcgag
acgcgcccgctcgacgacaaccacatcaccggcagcgtcggagagatgctcgccaagatc
gccgagggcatcccggtcgacggaatggaggcgctgcagccggtgctacgccccgacgag
ctcgccctgctcatcgaccatctgccggctgataccccgctgctgatctgcgacccggag
aaggtgcgcacccgcgcggccgacctgatcgcgaccgggcgcgagttcctagaggcgacg
tggtcggtcgccgccatcggcggtgacgccccgatcgacgtcgagcagctcggcggttcc
ggcttccgtgatctcgaggacgtccgcgaggcggcccgggcgagcaaccacccctggtgg
acgttgagtcagcttgccgctgaggacgccatcgaactagaggtccgcaccgccccgtcg
gcgcgcggccagcagagcaccgtcgatgagatcttcgcgatgctgcgcgcccacgttctc
accggcgggtatggcgcggttgtggcccccggcaccggcaccgcccaccgcgtcgtcgag
caactcggcgaacgcgacatcccggcggggatgctcgagccgggtgaggcgcccaaacaa
ggggtggtgggcgtccttcggggcccgctgcacgacggcatcatcgtgcccggcgccaac
ctcgtggtcatcaccgagacagacctgaccggcaaccgggtggccgcccccgaaggcaag
cggctggccgccaagcgccgcaacaccgttgacccgctggcactgaccgccggcgacctg
gtggttcacgaccagcacggcatcggccggttcgtcgaaatggtcgagcgcaccgtgggc
ggtgcgcgccgcgagtacctggtgttggagtacgggtcgagtaagcgcggccagggagcc
gacaaactgttcgtgccgatggactcgctggatcagctgtcgcgctacgtcggtggccag
gaacccagcctgagccgcctcggcggcagcgactggacgaacacgaaaaccaaggcgcgc
aaggcggttcgtgagatcgccagcgagctggtggcgctctacgccaagcggcaggccgcg
cccgggcacgccttcgggccggacaccccgtggcaggccgagatggaggatgcgttcggg
ttcaccgagaccatcgaccagctcaccgcgatccaagaggtcaaggccgacatggagaag
ccggtgccgatggaccgggtgatctgcggtgacgtcggttacggcaagaccgagatcgcg
gtgcgggcggcgttcaaggccgtgcaggacggcaagcaggtcgccgtcctggtgcccacc
acgctgctggccgaccagcatctgcagacgttcaccgcccggacggccggcttcccggtg
acggtgaagggcctgtcgcgattcaccgaccccagcgagtcccgcgcggtcgtcgagggc
atggccgacggcagtgtcgacatcgtgatcggcacccaccggctgctgcagaccgccgtg
cggtggaaggacctcggcctggtgatcgtcgatgaggagcagcgtttcggcgtcgagcac
aaggaacacatcaaggcgctgcgcagccacgtcgacgtgctcaccatgagcgccaccccg
atcccgcgcaccctggagatgagcctggccggcatccgggagatgtcgaccattctcacc
ccgcccgaggagcgttacccggtgctgacctacgtcggcccgcacgacgacaagcaggtc
accgccgcgcttcgccgcgagttgctgcgtgacgggcaggtcttctacatccataacagg
gtcgccagtatcgacagcgccgcggcccggatcaggcagctggttcccgaggcgcgggtg
gtggtcgcgcacggccagatgcccgaagaacagctggagcgcaccgtcgagggcttctgg
aaccgcgagtacgacatcctggtctgcaccacgatcgtcgaaaccggtctggacatttcc
aacgccaacaccctgatcgtcgaacgtgccgacaccttcggcctatcccagctacaccag
ttgcgcgggcgggtcgggcgcagccgcgagcggggctatgcctacttcctctaccccaag
gaaatgccgctcaccgagaccgcctacgaccggctggccaccatcgcgcagaacaacgag
cttggcgcgggaatggcagtggccatgaaggacttggagattcgcggcgccggcaatgtg
ctcggcgtcgagcagtccggtcacgtcgccggcgtcgggttcgacctgtacgtccggctg
gtgggcgaggccgtcgaggcgtaccgagccgctgccgacggacagacggtcaccacggct
gaagaacccaaggacgttcggctcgagctacccgtcgacgcgcacctgccgccggagtac
atcgccagtgaccggctgcggctggaggcctatcgccggctggccgccgccaccgacgac
gcgggcatcgcctcggtcgtggaggaactgaccgaccgctacgggccgctgcccgaaccc
gcgcagcggctgctggcggtggcccgtctgcgcatgctgtgccgcggctatggggtgact
gaagtggccgcaaccgggagtggttctgccacaacgattcgggtgtcgccgctgacgctg
cccgactctgcgcagttgcgcctgaagcgggtgtatcccggtgccggctatcgggcgacg
acctcgacggtgcaggtgccgatcccgcggtcgggcagcggtgtcggcgcaccgcggatc
cgtgacctggaattggtgcagatggtcgccgatctgctgctcgcacttgacggacagccg
cagggcacggttgatataaccaccttcacacccgctggcgcgcagaagggagagcggcgg
tga
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