Methylocystis heyeri: H2LOC_013050
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Entry
H2LOC_013050 CDS
T06290
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mhey
Methylocystis heyeri
Pathway
mhey03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mhey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H2LOC_013050 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhey03400
]
H2LOC_013050 (ligD)
Enzymes [BR:
mhey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H2LOC_013050 (ligD)
DNA repair and recombination proteins [BR:
mhey03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H2LOC_013050 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QGM46545
UniProt:
A0A6B8KHU5
LinkDB
All DBs
Position
complement(2859444..2861906)
Genome browser
AA seq
820 aa
AA seq
DB search
MALQAYREKRDFSGTPEPYGAVAPSEGSRFVVQKHAARRLHYDLRLEMDGALKSWAVTRG
PSLAPGEKRLAVHVEDHPLEYGDFEGVIPKGEYGAGKVIVWDRGRWSPIGNARKGYEKGH
LDFELFGEKLKGRWHLVRMRKNVRDKHENWLLIKGEDEFAQARAAPDILEERPESVKSGR
PIAQIDDKPIVEPAKPAKYKGAKKSLLPAFVEPMLASLTETAPSGGRWFHEIKFDGYRIQ
ARIEAGRVRLLTRRGLDWSARFGKRIVDALGALELRSALIDGEIVVENAAGASDFSALQT
DLSEGRGDRFRFYAFDLLYLDGFDLRSCALKHRRELLRKIVPEGAGALGFSAHFDEDGPL
VLRHCCRLGLEGIISKLADAPYRSGRAKSWLKAKCLLRQEFVIGGFAPATASRNAVGSLA
LGVFEKAGLRHVGRVGTGFSAAVAERLFAKLNAMPATSSPFCKRLGAAEARGLRFVRPEL
VAEVEFRGWTHDGHLRHASFCGLREDKPAREVVLETPDQPHRPEPERSAVKMTHLDRLYW
PESGVTKQGLADYYAEVWLYMRPFVIGRPLALLRCPDGTQGQCFFQKHGWRGINPKVALV
KDPGAPGEPALISIDDFDGLMGLVQGAALEIHAWGAGVADWERPDMITIDLDPGEGVGWA
DIVEAAQETRERLAQAGLAAFVKTSGGKGLHVVSPLLRKVGWSEAKSFTKGLAEAMKADS
PARYVSTITKARRKDRIFVDYLRNQRGATAVAAYSTRARPGAAVSMPLDWAELGDAVGPA
YFTVDNAPTRLSSLNLDPWKDFFMAAAPLELKKGKRRKAA
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgcaggcctatcgcgagaagcgggatttttcggggacgccggagccctatggc
gcggttgcgccctccgagggaagccgcttcgtcgttcaaaagcatgccgcgagaaggctg
cattacgatttgcggctcgagatggacggcgccctcaagagctgggcggtgacgaggggg
ccgagccttgcgccgggcgaaaagcggctcgccgttcatgttgaagatcatccgctggaa
tatggcgatttcgagggcgtgattccaaagggggaatatggcgccggcaaggtcatcgtc
tgggatcggggccgctggtcgccgatcgggaacgccagaaagggctatgaaaaaggccat
ctcgatttcgagctgttcggggaaaagctcaagggccgctggcatctggtgaggatgcgg
aaaaacgtccgggacaagcacgagaactggctgctcatcaagggcgaggacgaattcgcg
caggctcgggcggctcccgacatactcgaagaaaggccggaatcggtcaaaagcggccgg
ccgattgcgcagatcgacgacaagcccatcgttgagccggcaaagcctgcaaaatacaag
ggcgccaaaaaatcgctcctgccggcttttgtcgagccgatgctggcttcccttacagag
accgcgccctctggggggcgctggtttcacgagatcaaattcgacggctatcgcattcag
gcgcggatagaggcggggcgcgttaggctcctgacgcggcgcggcctggattggagcgcg
agatttggaaagaggatcgtcgacgccctcggcgcgctggagcttcgctccgctctgatc
gacggcgagatcgtggtggagaacgccgccggcgcgtcggatttttcagccctacagaca
gatctcagcgaggggcgcggcgatcgtttccgtttttacgctttcgatcttctctatctc
gacgggttcgacctgcgctcctgcgccctcaaacatcgcagggagctgctgcgaaaaatc
gtgccggagggcgccggcgcgctgggcttcagcgcccatttcgacgaagacggcccgctg
gtcctgcgccattgctgccggctcggtctcgaaggaatcatatcgaagctcgcggacgcg
ccctatcgcagcggccgcgccaagagctggctcaaagcgaaatgcctgttgcggcaggaa
ttcgtgatcggcggttttgcgcccgcgaccgcttcccgcaatgcggtcggatctctggcg
ctgggcgtgttcgaaaaggccggcctgagacatgtggggcgcgtcggaaccggcttctct
gccgccgtggccgagcgactcttcgcgaagctcaatgccatgccggcgacgtcgagtccg
ttctgcaagcgtctcggcgcagcggaagcgcggggcctacgcttcgtgcgtcccgaactc
gtcgctgaggtagagtttcgaggctggacccatgacggccatctgcgccacgcttccttt
tgcgggttgcgcgaagacaaaccggcccgggaggtcgtgctcgagacgccagaccagccc
cataggcccgaaccagaaagatccgcggtgaagatgacccatctcgatcggctctactgg
ccggaatccggcgtgaccaagcagggcctcgcggattattacgccgaggtctggctttat
atgcggccctttgtgatcggccgcccgctcgccttgctgcgctgccccgacggaacgcaa
gggcaatgcttttttcaaaagcacggctggcggggaatcaatccaaaagtggctttggtg
aaagacccgggagcgccgggggagcccgcgctcatcagcatcgacgatttcgacggattg
atggggctggtgcagggagcggcgctcgaaatccacgcctggggcgctggcgtcgccgat
tgggagcggcccgatatgatcaccatcgacctcgatcccggcgaaggcgtcggatgggcg
gatatcgtagaggctgcgcaggaaacgcgcgaaaggctcgcccaagcggggttggccgcc
tttgtgaaaacctcgggcgggaaggggctgcatgtcgtctcgccgctgctgcgcaaggtg
ggctggagcgaggcgaagtccttcaccaagggactggcggaggcaatgaaggccgacagc
cctgcgcgttacgtttcgacgataaccaaggcgcggcgcaaggacaggatcttcgtcgat
tatctgcgcaaccagcgcggcgccaccgcggtcgccgcctattcgacgcgggcgcggccg
ggcgcagcggtctcgatgccgctcgactgggccgaactcggcgacgccgtcgggccggct
tatttcaccgtcgacaatgcgcccacccggctttcctcgctcaaccttgatccctggaag
gatttctttatggccgccgcgccgctggagctcaaaaagggaaaacgccgaaaagcggcg
tag
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