KEGG   Methylocystis heyeri: H2LOC_013050
Entry
H2LOC_013050      CDS       T06290                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mhey  Methylocystis heyeri
Pathway
mhey03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mhey00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H2LOC_013050 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mhey03400]
    H2LOC_013050 (ligD)
Enzymes [BR:mhey01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H2LOC_013050 (ligD)
DNA repair and recombination proteins [BR:mhey03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H2LOC_013050 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QGM46545
UniProt: A0A6B8KHU5
LinkDB
Position
complement(2859444..2861906)
AA seq 820 aa
MALQAYREKRDFSGTPEPYGAVAPSEGSRFVVQKHAARRLHYDLRLEMDGALKSWAVTRG
PSLAPGEKRLAVHVEDHPLEYGDFEGVIPKGEYGAGKVIVWDRGRWSPIGNARKGYEKGH
LDFELFGEKLKGRWHLVRMRKNVRDKHENWLLIKGEDEFAQARAAPDILEERPESVKSGR
PIAQIDDKPIVEPAKPAKYKGAKKSLLPAFVEPMLASLTETAPSGGRWFHEIKFDGYRIQ
ARIEAGRVRLLTRRGLDWSARFGKRIVDALGALELRSALIDGEIVVENAAGASDFSALQT
DLSEGRGDRFRFYAFDLLYLDGFDLRSCALKHRRELLRKIVPEGAGALGFSAHFDEDGPL
VLRHCCRLGLEGIISKLADAPYRSGRAKSWLKAKCLLRQEFVIGGFAPATASRNAVGSLA
LGVFEKAGLRHVGRVGTGFSAAVAERLFAKLNAMPATSSPFCKRLGAAEARGLRFVRPEL
VAEVEFRGWTHDGHLRHASFCGLREDKPAREVVLETPDQPHRPEPERSAVKMTHLDRLYW
PESGVTKQGLADYYAEVWLYMRPFVIGRPLALLRCPDGTQGQCFFQKHGWRGINPKVALV
KDPGAPGEPALISIDDFDGLMGLVQGAALEIHAWGAGVADWERPDMITIDLDPGEGVGWA
DIVEAAQETRERLAQAGLAAFVKTSGGKGLHVVSPLLRKVGWSEAKSFTKGLAEAMKADS
PARYVSTITKARRKDRIFVDYLRNQRGATAVAAYSTRARPGAAVSMPLDWAELGDAVGPA
YFTVDNAPTRLSSLNLDPWKDFFMAAAPLELKKGKRRKAA
NT seq 2463 nt   +upstreamnt  +downstreamnt
atggcgctgcaggcctatcgcgagaagcgggatttttcggggacgccggagccctatggc
gcggttgcgccctccgagggaagccgcttcgtcgttcaaaagcatgccgcgagaaggctg
cattacgatttgcggctcgagatggacggcgccctcaagagctgggcggtgacgaggggg
ccgagccttgcgccgggcgaaaagcggctcgccgttcatgttgaagatcatccgctggaa
tatggcgatttcgagggcgtgattccaaagggggaatatggcgccggcaaggtcatcgtc
tgggatcggggccgctggtcgccgatcgggaacgccagaaagggctatgaaaaaggccat
ctcgatttcgagctgttcggggaaaagctcaagggccgctggcatctggtgaggatgcgg
aaaaacgtccgggacaagcacgagaactggctgctcatcaagggcgaggacgaattcgcg
caggctcgggcggctcccgacatactcgaagaaaggccggaatcggtcaaaagcggccgg
ccgattgcgcagatcgacgacaagcccatcgttgagccggcaaagcctgcaaaatacaag
ggcgccaaaaaatcgctcctgccggcttttgtcgagccgatgctggcttcccttacagag
accgcgccctctggggggcgctggtttcacgagatcaaattcgacggctatcgcattcag
gcgcggatagaggcggggcgcgttaggctcctgacgcggcgcggcctggattggagcgcg
agatttggaaagaggatcgtcgacgccctcggcgcgctggagcttcgctccgctctgatc
gacggcgagatcgtggtggagaacgccgccggcgcgtcggatttttcagccctacagaca
gatctcagcgaggggcgcggcgatcgtttccgtttttacgctttcgatcttctctatctc
gacgggttcgacctgcgctcctgcgccctcaaacatcgcagggagctgctgcgaaaaatc
gtgccggagggcgccggcgcgctgggcttcagcgcccatttcgacgaagacggcccgctg
gtcctgcgccattgctgccggctcggtctcgaaggaatcatatcgaagctcgcggacgcg
ccctatcgcagcggccgcgccaagagctggctcaaagcgaaatgcctgttgcggcaggaa
ttcgtgatcggcggttttgcgcccgcgaccgcttcccgcaatgcggtcggatctctggcg
ctgggcgtgttcgaaaaggccggcctgagacatgtggggcgcgtcggaaccggcttctct
gccgccgtggccgagcgactcttcgcgaagctcaatgccatgccggcgacgtcgagtccg
ttctgcaagcgtctcggcgcagcggaagcgcggggcctacgcttcgtgcgtcccgaactc
gtcgctgaggtagagtttcgaggctggacccatgacggccatctgcgccacgcttccttt
tgcgggttgcgcgaagacaaaccggcccgggaggtcgtgctcgagacgccagaccagccc
cataggcccgaaccagaaagatccgcggtgaagatgacccatctcgatcggctctactgg
ccggaatccggcgtgaccaagcagggcctcgcggattattacgccgaggtctggctttat
atgcggccctttgtgatcggccgcccgctcgccttgctgcgctgccccgacggaacgcaa
gggcaatgcttttttcaaaagcacggctggcggggaatcaatccaaaagtggctttggtg
aaagacccgggagcgccgggggagcccgcgctcatcagcatcgacgatttcgacggattg
atggggctggtgcagggagcggcgctcgaaatccacgcctggggcgctggcgtcgccgat
tgggagcggcccgatatgatcaccatcgacctcgatcccggcgaaggcgtcggatgggcg
gatatcgtagaggctgcgcaggaaacgcgcgaaaggctcgcccaagcggggttggccgcc
tttgtgaaaacctcgggcgggaaggggctgcatgtcgtctcgccgctgctgcgcaaggtg
ggctggagcgaggcgaagtccttcaccaagggactggcggaggcaatgaaggccgacagc
cctgcgcgttacgtttcgacgataaccaaggcgcggcgcaaggacaggatcttcgtcgat
tatctgcgcaaccagcgcggcgccaccgcggtcgccgcctattcgacgcgggcgcggccg
ggcgcagcggtctcgatgccgctcgactgggccgaactcggcgacgccgtcgggccggct
tatttcaccgtcgacaatgcgcccacccggctttcctcgctcaaccttgatccctggaag
gatttctttatggccgccgcgccgctggagctcaaaaagggaaaacgccgaaaagcggcg
tag

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