Methylocystis heyeri: H2LOC_018165
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Entry
H2LOC_018165 CDS
T06290
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhey
Methylocystis heyeri
Pathway
mhey03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H2LOC_018165 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhey03400
]
H2LOC_018165 (mfd)
Enzymes [BR:
mhey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H2LOC_018165 (mfd)
DNA repair and recombination proteins [BR:
mhey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H2LOC_018165 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
SecA_DEAD
UB2H
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QGM48150
UniProt:
A0A6B8KMA1
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All DBs
Position
4024954..4028490
Genome browser
AA seq
1178 aa
AA seq
DB search
MRAETAAGALKTALSRIEAGEKLLCAHAPEGFDAFIAADFARALAARSEGEAAVFVHVAR
DATRSAQFREALRFAAPFVEALDIPGWDCQPYDRVSPNAAIASRRMTGLARLARSRSSAE
QPRVVVTTVDCLLQRVPPRAKIAADTFSAAPGNMVEMDLLARWLENNGFLRSSTVREPGE
YAQRGGIVDLFAPSMPAPIRLDFFGNTLESIRSFDPETQRTTGQLRALDLVPMSELQLVS
DTMRRFRQGYTTRFGGETRGDSLYEAISEGRRHPGAEHWLPLFYDRLDTLFDYFGDAPLL
LDAQSEDAAGERLAQIADYYEARKSAFDAEQGRSNYKPLEPRELYLTQEEWRGQLERRAQ
ARFSPFSAPEGEAASLDFGARPGRDFAPERSQPEVNVFEAAVGHIEALAARDKTVVVAAW
SDGSRERLGHVLTEHGLKAPMLVSSLPAAFALGKGKVALAVLGVEHGFETDDLAVVGEQD
ILGDRLVRRRRKAKRAENLLGEIGALSAGDLVVHVDHGIGRFVGLETITAAGEPHDCLEI
HYAEGAKLFLPVENIELLTRYGSEDTEVALDRLGGAGWQGRKARMKNRIREMAKGLIAIA
AQRMLKQAPKLIAPEGLYDEFCARFPYDETEDQAAAIEAVLEDLASGRPMDRLVCGDVGF
GKTEVALRAAFCSAINGKQVAVVTPTTLLARQHYKNFSERFSGLPVRIGRLSRMVGAAET
KETKKQLGEGSVDILIGTHAILGKGVNFKDLGLVIVDEEQHFGVGHKERLKELRAEVHVL
TLSATPIPRTLQLAMTGVRELSLIATPPVDRLAVRSFVSPFDPLIVREALLRERYRGGQA
FFVCPRIEDLDEASAFLRENVPEAKFVVAHGQMPPTELEEKMSAFYEGGYDILLSTTIVE
SGLDIPTANTLIVWRADMFGLAQLYQLRGRVGRGKTRAYALFTTPANRTITPQAQKRLEV
LQSLDTLGAGFQLATHDLDIRGAGNLLGDEQSGHIKEVGYELYQQMLHDAIELLKAGVDE
PEEEAWSPTIALGAPVTIPEDYVADLSLRLQLYRRLSTLETDADIDGFAAEMVDRFGPTP
PEVQQLLKIVAIKALCRRAHVEKVDAGPKGVIIAFRDNLFADPAGLVRYVSQQGFGAKVR
PDMKIVFVRDFDNLKQRLEGTRDILRSLVTIAEKKQKS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
attcgcgccgagacggcggccggcgccctgaaaaccgcgctttcgcgcatcgaggccggg
gaaaagctgctctgcgcccatgcgcccgagggtttcgacgctttcatcgccgctgatttc
gcccgcgcgctggcggcgcgatcggagggcgaggccgccgtcttcgtgcatgtggcgcgc
gacgccacccgctcggcgcagttccgcgaggccttgcgtttcgctgcgccttttgtggag
gcgctcgacattccgggctgggactgccagccctacgaccgggtttcgcccaacgcggcg
atcgcgtcgcggcgcatgaccggtctcgcccgcctcgcgcgctcgcgttcctcggccgag
cagccccgggtcgtggtcacaaccgtcgattgcctgctacaacgcgtccccccgcgggcg
aaaatcgccgccgacactttttccgccgcgcctggcaatatggtcgagatggaccttctg
gcgcgctggctggagaacaacggctttttgcgctccagcacggtgcgcgagccgggagaa
tacgcccagcgcggcggcatcgtcgatcttttcgcccccagcatgccggcgccgatcagg
ctcgatttcttcggcaacacgctcgaatcgattcgctccttcgatcccgagacccagcgc
accacgggccagcttcgcgccctcgatctcgtgccgatgagcgaattgcagctcgtcagc
gacacgatgcggcggttccgccagggctacaccacgcgtttcggcggcgagacccggggc
gactcgctctatgaggcgatcagcgaaggccgccgccatcccggcgccgagcactggctg
ccgttgttctacgaccggctcgacacattgttcgattatttcggcgatgcgccgctcctg
ctcgacgcccagagcgaggacgccgccggcgagcggctggcgcagatcgccgattattac
gaggcccgcaagagcgccttcgacgccgagcagggccgctcgaactacaagccgctggag
ccgcgcgagctttatctcacgcaggaggaatggcgcggccagctcgagcgccgggcgcag
gcgcgcttttcgcccttttcagcgcccgagggcgaggccgcgagccttgatttcggcgcg
cggccgggcagggatttcgcgcccgagcgcagccagccggaggtcaacgttttcgaggcc
gcggtcggccatatcgaggcgctggcggcgcgggacaagaccgtggtggtcgcggcctgg
tccgacggctcgcgcgagcgcctcggccatgtgctgactgaacatggcttaaaggcccct
atgttggtttcttcgttgccggccgcttttgcgctcggcaaggggaaggttgcgctcgcg
gtgctcggcgtagagcacggcttcgaaaccgacgatctcgccgtcgtcggcgagcaggac
attctcggcgaccggctggtgcgccgccgccgcaaggccaagcgcgctgaaaatctcctc
ggcgaaataggcgctctttcggcgggcgatctcgtcgtgcatgtcgatcacggcatcggc
cgcttcgtcgggctcgagaccatcacagccgccggcgagccgcatgattgcctcgaaatc
cattacgcggagggggccaagcttttcctccccgtcgaaaacatcgagctgctgacccgc
tacggctccgaggacaccgaagtcgcgctcgaccggctcggcggcgccggctggcagggc
cgcaaggcgcggatgaagaaccgcatccgcgaaatggccaagggcctgatcgcgatagcg
gcgcagcgcatgctcaaacaggcgcccaagctcattgcgccggaagggctctacgacgaa
ttctgcgcccgctttccctacgacgagaccgaagaccaggccgcggcgatcgaggcggtt
ctggaggatctcgcctcgggccggccgatggaccggctggtttgcggcgacgtcggtttc
ggcaagaccgaggtcgccctgcgcgcggccttctgctcggcgatcaacggcaagcaggtc
gccgtggtgacgccgaccacgctgctggcgcggcagcattacaagaatttctcggagcgg
ttctcgggcctgccggtgcgcatcgggcggctgtcgcgcatggtcggcgccgccgagacc
aaagagaccaagaagcagctcggcgaaggcagcgtcgacatattgatcggcacccatgcc
attctcggcaagggggtcaatttcaaggatctcggcctcgtcatcgtcgacgaggagcag
catttcggcgtcggccacaaggagcgcctcaaggagctgcgcgccgaggtccatgtgctg
acgctgtcggcgacgccgatcccgcgcacgctgcagctcgccatgacgggggtgcgcgag
ctttcgctgatcgcgacgccgccggtcgatcgtctcgccgtgcgcagtttcgtttcgcct
ttcgatccgctcatcgtgcgcgaagctttgctgcgcgagcgttatcgcggcgggcaggcc
tttttcgtctgtccccggatcgaggacctcgacgaagcctcggcctttttgcgcgaaaat
gtgccggaggcgaaattcgtcgtggcccacggccagatgccgccgaccgagctcgaagag
aagatgtcggcgttctacgagggcggctacgacattctgctgtcgacgacgatcgtcgaa
tcggggctcgacattccgaccgcgaacacgctgatcgtatggcgcgccgatatgttcggc
ctcgcccagctttatcagctgcgcggccgcgtcgggcgcggcaagacccgcgcctatgcg
ctgttcacgacgccggccaaccgcaccatcacgccccaggcgcaaaagcggctcgaggtg
ctgcaatcgctcgacacgctcggggccggcttccagctcgcgacccacgacctcgacatc
cgcggcgccggcaatctcttgggcgacgagcagtccggccatatcaaggaggtcggctac
gagctttatcagcagatgctgcacgacgcgatcgaactgctgaaggccggggtcgatgag
ccggaggaggaggcctggtcgccgaccatagcgctcggcgcgccggtgacgatcccggag
gattatgtcgccgacctcagcctgcgcctgcagctctaccggcggctgtccacgctggag
accgacgcggacatcgacggtttcgccgccgaaatggtcgaccgcttcgggccgacgccg
ccggaagttcagcaattgctcaagatcgtcgccatcaaggcgctgtgccgaagagcccat
gtggagaaggtcgacgccggacccaagggcgtcatcatcgccttccgcgacaacctgttc
gccgatccggcaggcctcgtccgctatgtctcccagcagggcttcggcgccaaggtccgc
ccggacatgaagatcgtgttcgtgcgcgacttcgacaatctcaagcagcgcctcgaaggc
acgcgggacatattgcgctcgctggtgaccatcgccgagaaaaagcaaaagagctga
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