Mycolicibacter hiberniae: MHIB_05170
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Entry
MHIB_05170 CDS
T06801
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mhib
Mycolicibacter hiberniae
Pathway
mhib03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mhib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MHIB_05170 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhib03400
]
MHIB_05170 (mfd)
Enzymes [BR:
mhib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MHIB_05170 (mfd)
DNA repair and recombination proteins [BR:
mhib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MHIB_05170 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
MFD_D3
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BBZ22099
UniProt:
A0A7I7WWW2
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All DBs
Position
536302..539946
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AA seq
1214 aa
AA seq
DB search
MTAPGHQSVHTPIAGIVDLALSAPTFTELMESVGEPPAELALVGPVGARPFAAAALARDR
ALLVVTATGHEADDLTAELRGVYGHAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAR
PDDARLGPPLRVVVTTARSLLQPLTGQLSAIEPVLLALGDEVAFESVIARLVELAYTRVD
LVGKRGEFAVRGGILDLFPPTAEHPVRIEFWGDEITEIRPFSVADQRSIPEIEVGTVVAV
PCRELLLTDDVRARAAELARDQPHTDNAVSGTVGDMLAKLAEGIPVDGMEALAAVLRPGP
QTLLTDQLRPGTPVLVCDPEKVRARAADLIKTGREFLEASWSVAAIGGEAPIDIEQLGGT
GFRDFAQVRQAALDGGHPWWTLSQLPDPDATQLDVRPAPSARGRQRDIDEIFAMLRAHIA
TGGRAALVAPGIGTARRMVEQLAESDIAATLLEPGAAPQPGAVGVLQGPLHEGLIVPGAN
LVVVTEADLTGNRVSGTEGKRLAAKRRNAVDPLALTAGDLVVHDQHGIGKFVEMTERTVG
GARREYLVLEYASGKRGANGTDKLYVPMDSLDQLSRYVGGTAPALSRLGGSDWTQTKTKA
RKAVREIADELVALYAKRQAAPGHAFAPDSPWQAEMEDAFGFTETVDQLTAIGEVKADME
KPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFSTRMAGFP
VTVKGLSRFTDARESKATIDGLADGSVDVVIGTHRLLQTGVRWKDLGLVIVDEEQRFGVE
HKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEDRYPVLTYVGPHDDKQ
VAAALRRELLRDGQVFYVHNRVSSIDAAAARVRALVPEARVVVAHGQMPEEMLETTVQGF
WHREYDILVCTTIIETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYP
RETPLTETAHDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVR
LVGEAVEAYRAAFNGETVTTEEVKDVRIDLPVDAHLPPEYINSDRLRLEAYRRLASAHDD
DEIAAVVEELTDRYGPLPEPAGRLVAVARLRLLCRATGITEVSAASATTLRISPLTLADS
AQLRLKRMHPSASYRATTATVQVPIPRAGGAGAPVGAPRIRDVELVQMVADLISALDGKP
QGVLNVTGAVPAVR
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccggggcaccagagtgtccacaccccgatcgcggggatcgtagacctggcg
ttgagcgcgccgaccttcaccgaactcatggagtccgtgggcgaaccgcccgctgagctc
gcactggtcgggccggtcggtgcacggccgttcgcggctgccgccctggcgcgcgaccgc
gccctgctggtggtcaccgccaccggccacgaggccgacgacctgaccgccgagctgcgc
ggcgtctatggccacgcggtggcgctcttcccgtcctgggagacgctgccgcacgagcgg
ctctcgccgggcgtggacaccgtcggcgcccgcctgctgctgctgcgccggctggcccgg
cccgacgacgcccggctcggtccgccgctacgggtggtggtgaccaccgcgcgatcgctg
cttcagccgctgaccggccaattgagcgcaatcgagccggtgctgctggcgctcggcgac
gaggtcgccttcgagtcggtgatcgcccggctggtggagctggcctatacccgggttgac
ctggtcggcaagcggggtgagttcgccgtccgcggcggcatcctcgacctgttcccgccg
accgccgaacaccccgtacggatcgagttctggggcgacgagatcaccgagatccggccg
ttctcggtggccgatcagcgctccatccccgagatcgaggtgggcaccgtggtggcggtg
ccctgccgggagctgctgctcaccgatgacgttcgggcccgcgcggccgagctggcgcgc
gatcagccgcacaccgacaacgccgtgagcggcactgtcggtgacatgctggccaagctc
gccgagggcatcccggtcgacggcatggaggcgctggctgccgtgttgcggcccggcccg
cagaccctgctgaccgatcagctgcgccccggtaccccggtgctggtctgcgatccggag
aaggtgcgcgcgcgtgccgcggatctgatcaagaccggccgggagttcctggaagcctcc
tggtcggtcgccgcgatcggtggtgaggcgccgatcgacatcgagcagctcggcgggacg
ggtttccgggactttgcgcaggtacgccaggccgctctcgacggcggacacccgtggtgg
acgctgagccagctgcccgacccggacgcgacgcagctcgacgtgcgtccggcaccgtcg
gcccgcggccggcaacgcgacatcgacgagatcttcgcgatgctgcgggcccacatcgcc
accggcggacgcgcggccctggtcgcccccgggatcgggaccgcccgccggatggtggag
cagctggccgaatccgacatcgcggcgaccctgctggagcccggtgcggcaccgcagccc
ggggcggtcggggtgctgcagggcccgctgcacgagggactgatcgtccccggcgccaac
ctggtggtggtgaccgaagccgacctgaccggcaaccgggtgagcggcaccgaaggcaag
cggctggcggccaagcgccgcaacgccgtcgatccgctggccctgaccgccggcgacctg
gtggtgcacgaccagcacggcatcggcaaattcgtggagatgaccgagcgcaccgtcggc
ggggcgcggcgcgagtacctggtgctggaatacgcgtcgggtaagcggggcgccaacggt
accgacaagctgtatgtaccgatggactcgctggaccagctgtcgcgctacgtcggcgga
acggccccggcgctgagcagactcggcggcagcgactggactcagaccaagaccaaggcc
cgcaaggcggtgcgcgagatcgccgacgaactcgtcgcgctctacgccaaacgccaggcc
gcgcccggtcacgcgttcgccccggacagcccgtggcaagccgagatggaagacgcgttc
gggttcaccgagaccgtggatcagctcaccgcgatcggcgaggtcaaggccgacatggaa
aagccggtgccgatggaccgggtgatctgcggcgacgtcggctacggcaagaccgagatc
gcggtgcgcgcggcgttcaaggccgtccaggacggcaagcaggtcgcggtgctggtgccc
accacgctgctggccgatcagcacctgcagacgttcagcacccggatggccgggttcccg
gtgaccgtcaaggggctgtcgcggttcaccgatgcccgcgaatccaaggcgaccatcgac
gggctggccgacggatcggtcgatgtggtgatcggaacgcaccggctgctgcagaccggg
gtgcgctggaaggacctcggtctggtgatcgtcgacgaggaacagcggttcggcgtcgag
cacaaggagcacatcaaggctttgcgcacccatgtcgacgtgctcaccatgagcgcgaca
cccatcccgcgcaccctggagatgagcctggccggcatccgggagatgtcgaccatcctc
accccgcccgaagaccgctatcccgtgctgacctacgtcggcccgcacgacgacaagcag
gtcgcggccgcgctgcgccgggaactgctgcgcgacggtcaggtcttctacgtgcacaac
cgggtcagttccatcgacgcggccgccgcccgggtacgcgcgctggtgcccgaggcccgg
gttgtggtcgcgcacggtcagatgcccgaggaaatgctggagaccacggtgcagggtttc
tggcaccgcgagtacgacatcctggtgtgcaccacgatcatcgaaaccggcctggacatc
tccaacgccaacaccctgatcgtcgagcgggccgacaccttcgggctctcgcagctgcat
cagctgcggggccgcgtcggacgcagccgggaacgcggctacgcctacttcctctacccg
cgcgagaccccgctgaccgagaccgcccacgaccggctggccaccatcgcccagaacaac
gaactgggcgccggcatggcggtggcgatgaaggacctggagatccgcggtgccggcaac
gtgctgggggtggagcagtccgggcacgtcgccggggtgggcttcgacctgtacgtccgg
ctggtcggcgaggccgtcgaagcgtatcgggccgccttcaacggcgagaccgtcaccacc
gaggaggtcaaggacgtccggatcgacctgccggtcgacgcgcacctgccgccggagtac
atcaactccgaccggctgcggctcgaggcgtaccgccgcttggcctccgcccacgacgac
gacgagatcgcggcggtggtcgaggaactcaccgaccgctacgggccgcttcccgaaccc
gccggccggctggtcgcggtggcccggctgcggctgctgtgccgcgcgaccggtatcacc
gaagtctcggcggcctcggcgaccacgctgcggatctcgccgctgaccctggcggattcg
gcccagctgcggctcaagcggatgcacccctcggccagctaccgcgccaccaccgccacc
gtgcaggtgccgataccgcgggccggcggagccggcgcgcccgtcggggcgccccgcatc
cgcgacgtcgaactcgtccagatggtcgccgacctgatttcggcgctcgacggcaagccg
cagggcgtgctcaacgtcaccggcgcggtgcccgcagtacggtaa
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