Microbacterium hominis: CXR34_07730
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Entry
CXR34_07730 CDS
T05238
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mhos
Microbacterium hominis
Pathway
mhos03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mhos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CXR34_07730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhos03400
]
CXR34_07730
Enzymes [BR:
mhos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CXR34_07730
DNA repair and recombination proteins [BR:
mhos03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CXR34_07730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AUG29359
UniProt:
A0A2K9DEK7
LinkDB
All DBs
Position
complement(1650001..1652427)
Genome browser
AA seq
808 aa
AA seq
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MAQAAQVVEVGGRRLRLSNLDKVLYPATGTTKAEVIDYYSRIAPLLLPHLAGRPVTRLRW
PDGTGEPPFFAKDLEAGAPDWLRRRAIDHSGGAKDYPLIDDVAGLVYLAQVASLELHTPQ
WRFDGGGRGSPDRLVLDLDPGPGVGLPECAEVARRARGILADMGMDPLPVTSGSKGIHLY
APLDATRTSDEISAFARELARALEADDPDLVVSAMSKNARPGKVFVDWSQNNAAKTTIAP
YSLRGRAEPTVAAPRTWAELDDPDLRHLLFDEVLARAASDGDLLAPLAPVAPDPLSSYFA
KRTPSATPEPFPTPANRHALAEPPHPGPAGHSGSHESWRFVIQEHHASRLHFDLRLEHDG
VLVSWAVPRGIPATPDRNHLAVMTEPHPLEYLTFAGEIPAGEYGAGTMTVWDSGTFTVEK
WRDDEVIATLSGRPDGPLGRVRIALIRTAGSGEKSQWLLHRTKDAATPPVRAARAGHRAP
ARTASGPDAPMLAVSTTPALAAAAARRWGDLPWVEFKWDGIRAVGTWDGSRLRLRARSGA
DITDRYPELTSGDVGFGPRPAVVDGEIVARDAAGRPSFTRLQSRMHVTSAPEIAREAQRI
PVDYFLFDVLRVGDEDVTGRPLRERREILETIAADAIAAVAVPPVADDVSDALTAAAELH
LEGVVVKDPRSPYRRGARSEEWLKVKLTAMQEVVIGGIRPGKGGRRGSIGSLLLGIPDED
GLHYVGRVGTGFGDRELSRLAALLEPLRTDSSPLLGVPVADASDALWVRPELVGEVEYAE
FTPSGTLRHARWRGLRPDVDPADVRRDD
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggcagcacaggtcgtcgaggtcggcggacgacgcctccggctgagcaacctc
gacaaggtgctgtaccccgcgaccggcaccaccaaggccgaggtcatcgactactactcg
cgtatcgctccgctcctgctcccccatctcgcgggccgacccgtcacgcggctgcggtgg
cccgacggcaccggcgagccccccttcttcgcgaaagacctggaggccggcgcacccgac
tggctccggcgccgcgcgatcgatcactccggcggagccaaggactacccgctgatcgac
gacgtcgcgggcctggtgtacctcgcgcaggtcgcgagcctcgagctgcacacgccgcaa
tggcgcttcgacggcggcggccgcggatcgcccgaccggctcgtgctcgacctcgacccc
ggccccggcgtcgggctcccggagtgcgccgaggtggcccgccgggcccgcggcatcctg
gcggacatgggcatggacccgctgccggtgaccagcgggtcgaagggcatccacctgtac
gcacccctggacgcgacgcgcacgagcgacgagatctcggcgttcgcgcgcgagctggca
cgcgcgttggaagccgacgatcccgatctcgtcgtgagcgcgatgagcaagaatgcgcgc
cccggcaaggtgttcgtcgactggagccagaacaacgccgccaagaccacgatcgcgccc
tactcgctccgcggacgcgcggagccgacggtcgccgccccccgcacctgggccgagctc
gacgatcccgacctgcggcacctgctgttcgacgaggtgctcgcccgcgccgcctccgac
ggcgacctgctcgcgcccctggcgcccgtcgcgcccgatcccctctcctcctacttcgcg
aagcgcaccccctccgccacgcccgaaccctttcccacgcccgcgaaccgacacgccctg
gccgagccgccacaccccggcccggcggggcatagcggctcgcacgagtcgtggcggttc
gtgatccaggagcatcacgcgtcacgtctgcacttcgacctccggttggagcacgacggg
gtgctcgtcagctgggccgtgccgcgcggcatcccggcgacccccgatcgcaaccacctc
gcggtcatgaccgagccgcaccccctcgagtacctcaccttcgccggcgagatccccgcc
ggcgagtacggcgcgggaacgatgaccgtctgggactccggcacgttcacggtggagaag
tggcgcgacgacgaggtgatcgcgaccctctccggccggccggacggcccgctcggacgt
gtgcggatcgccctgatccgcaccgccggctcgggtgagaagtcccagtggctcctgcac
cgcacgaaggatgccgcgacgccgccggtccgcgccgcgcgcgccgggcatcgtgcgccc
gcgcgaacggcgagcgggcccgacgccccgatgctcgcggtgtcgacgacgccggcgctc
gccgcggcggccgcgcgaaggtggggcgacctcccctgggtcgagttcaagtgggacggc
atccgcgccgtcggcacgtgggacggcagccgcctgcggttgcgagcacgcagcggcgcc
gacatcaccgaccgctaccccgaactcacctccggagacgtcggcttcggcccccgcccg
gcggtcgtcgacggcgagatcgtcgcccgggatgctgcgggccgcccgagcttcacgcgg
ctgcagtcgcgcatgcacgtgacctcggcgccggagatcgcgcgggaggcgcagcgcatc
cccgtcgactacttcctcttcgacgtgctgcgcgtcggcgacgaggacgtcaccgggcgt
cccctgcgcgaacgccgcgagatcctcgagacgatcgcggccgacgccatcgccgccgtc
gccgtgccgccggtcgcggacgacgtgtccgatgcgctgacggccgccgcggagctgcac
ctggagggtgtggtcgtcaaggatcctcggtctccctaccgtcgcggagcccgatccgag
gagtggctcaaggtcaagctgacggccatgcaggaggtcgtgatcggcggcatccgcccc
gggaaagggggacggcgcggcagtatcggatcgctgctgctcggcatccccgacgaggac
ggcctgcactacgtcggacgcgtcggcaccggattcggcgaccgcgagctgagccggctc
gcggcactgctcgagccgctgcgcaccgactcctcgcccctgctcggcgtgccggtcgcg
gacgcctccgatgcgctgtgggtgcggccggagctcgtcggcgaagtggagtacgcggag
ttcacgccgagcggcaccctgcgccacgcccggtggcgcggtctgcgtccggatgtggat
cccgcagacgtgcgccgggacgactga
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