Mesorhizobium huakuii: MCHK_5746
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Entry
MCHK_5746 CDS
T06432
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mhua
Mesorhizobium huakuii
Pathway
mhua03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mhua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MCHK_5746 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhua03400
]
MCHK_5746 (ligD)
Enzymes [BR:
mhua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MCHK_5746 (ligD)
DNA repair and recombination proteins [BR:
mhua03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MCHK_5746 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AID33539
LinkDB
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Position
832484..834973
Genome browser
AA seq
829 aa
AA seq
DB search
MAGLEQYHAKRDFKKTSEPAGKVARTKKSEAGGIFVIHKHAATRLHYDLRLEHGGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWVPETDPAKA
MKKGHISFELNGHKLHGLWHLVRLKPRAGEKRDNWLLIKSDDAAARPGEDILKERPESVK
SGLTIEEVGEGKAAKGKKPEVWHSNKPAAGKAKAASRKLVFIEPQLATLERDAPPGKDWL
HEVKFDGYRMQAHIAGTDVRLLTRTGLDWTEKFGGEIIAELAGLKCSDAIIDGEIVVLAD
SGVSSFALLQQDLSAKRANRFLYYVFDLMRLDGKDLRAEPLVERKQALQELLGKQAENPA
VRFSDHFFEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQEFVIGGYL
PSDKTGRGLRSLLVGYYEGGKLQYAGRVGTGFSAKGATELKNKLDALQAKASPFDKAVPK
GKGLVWVKPELVGEVEFRSWTSDRIIRHASFQGLREDKPAEDVVQEKPKAATGKGKPASS
GGGTMTTSVKLSHPDKLLWPDEKISKQGLLDHYAEVWPRMEQFVVNRPLSLVRAPDGIGG
PRFFQKHASAGMSDRIARMKDPTDGEEILFVRDFDGVAALVQYGVVEIHIWGCTIDKLEQ
PDQIIFDLDPDEGVDVKAVREAALDIRGRLDELSLPNFVKTSGGKGYHVLVPLKPSADWE
AVKTFAHDFAKALEQGAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVAPYSSRAKKGAT
VSMPVTWAEIEAGLAPNAFPIGDKTTLKQLAEADPWVDFFKQGKVLKRG
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggccggcctcgaacaatatcacgccaagcgcgatttcaagaaaacgtcggagccggcg
ggcaaggtcgcacgcacgaaaaagagcgaagcgggcggcatcttcgtcatccacaagcac
gctgcgaccaggctgcattacgatcttcgcctcgagcatggcggcgtgctgtggagctgg
gccgtgacgcgagggccgagccttgatccgcacgaaaagcggctcgccgttcatgtcgag
gatcacccgatcgactatgcgccgttcgaaggcacgatcccgaagggcgaatatggcggc
ggctcggtcatcgtctgggacgaggggacatgggtgcctgagaccgacccggccaaggcg
atgaagaagggccacatcagtttcgagctcaacggccacaaattgcatgggctgtggcat
ctggtgcggctgaagccgcgggcgggcgaaaagcgcgacaactggctcttgatcaagtcc
gacgatgccgcggcgcgcccgggcgaggacattttgaaggagaggccggaatcggtgaag
tcgggcctgacgatcgaagaggtcggcgagggcaaggcggccaagggtaagaagccagaa
gtctggcactccaacaagccggccgccggcaaggcgaaggccgcaagccgcaaactcgtt
ttcatcgagccgcaactggcgacgctggagcgggacgcaccaccgggcaaggactggctg
catgaagtcaaattcgacggctatcgcatgcaggcgcatatcgccggcacggatgtgcgg
ctcttgacccgcaccggcctcgactggacggaaaaattcggcggggagatcattgccgag
ctcgccgggctgaagtgcagcgacgccatcatcgacggcgaaattgtcgtgctggccgac
agcggcgtctcgtccttcgcgctgctgcagcaggatctgtcggcgaagcgggcaaaccgc
ttcctctattacgtgttcgacctgatgcgtctcgacggcaaggatttgcgcgccgagccg
ctggtcgagcgcaagcaggccttgcaggagctgctcggcaagcaggccgagaacccggcg
gtgcgtttctccgaccattttttcgagcccggcaagatcatgctggagcatgcctgcagg
atggggctggaaggcgtcgtgtccaaacgcgccgatgcgccctatcgcagcgggcgcggc
ccgacctgggtgaagtcgaaatgcacggcacggcaggaattcgtcatcggcggctatctg
ccttcggacaagaccgggcgcgggctgcgctcgctgctggtcggctattacgagggcggc
aaactgcagtatgccggtcgtgtcggcaccggtttttccgccaaaggcgcgacggagctg
aagaacaagctcgacgcgctgcaggcgaaggcttcgcccttcgacaaggccgtgccgaaa
ggcaaggggctggtctgggtcaagccggaattggtcggcgaagtggagtttcgcagctgg
acgtcggaccgtataatacgtcatgcctcgttccaggggctgcgcgaggacaagccggcg
gaggacgttgtgcaggaaaagcccaaggcagcgacaggcaagggcaagccggcctcgagc
ggcggcgggacgatgacgaccagcgtaaaactctcgcatcccgacaagctgctatggccc
gacgagaagatctccaagcagggcctgctcgaccattacgccgaggtttggccgcgcatg
gagcagttcgtcgtcaaccggccgctcagcctggtgcgggcgccggacggcatcggcggc
ccgcgcttcttccaaaaacatgcctcggccggcatgagcgacagaatagcccggatgaaa
gacccgacggatggcgaggaaatcctgttcgtgcgagatttcgacggggtggcggcgctc
gtccagtacggcgtggtcgaaatccacatctggggatgcacgatcgacaagcttgaacag
ccggaccagatcatcttcgatctcgaccccgatgaaggtgtcgacgtcaaagcggtgcgc
gaggcggcgctcgatatcaggggcaggctcgacgagctgtcgctgccgaacttcgtcaag
acatcgggcggcaagggctatcatgtgctggtgccgctgaaaccgtcggcggactgggag
gcggtgaagaccttcgcccatgatttcgccaaggcgctcgaacagggtgcccccgaccgc
tacacggcgacgctgtcgaagaaggcgcgcaccgggaaaatcttcgtcgactatctgcgc
aatggcaggggctcgacaacggtcgctccgtattcctcgcgcgccaagaagggcgccacc
gtatcgatgccggtgacctgggccgagatcgaggccggcctggcgccgaacgctttcccc
ataggcgacaagacgacgctgaagcagttggcggaagccgatccttgggtggatttcttc
aagcagggcaaggtgttgaagcgggggtag
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