KEGG   Mesorhizobium huakuii: MCHK_5746
Entry
MCHK_5746         CDS       T06432                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mhua  Mesorhizobium huakuii
Pathway
mhua03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mhua00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MCHK_5746 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mhua03400]
    MCHK_5746 (ligD)
Enzymes [BR:mhua01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MCHK_5746 (ligD)
DNA repair and recombination proteins [BR:mhua03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MCHK_5746 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AID33539
LinkDB
Position
832484..834973
AA seq 829 aa
MAGLEQYHAKRDFKKTSEPAGKVARTKKSEAGGIFVIHKHAATRLHYDLRLEHGGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWVPETDPAKA
MKKGHISFELNGHKLHGLWHLVRLKPRAGEKRDNWLLIKSDDAAARPGEDILKERPESVK
SGLTIEEVGEGKAAKGKKPEVWHSNKPAAGKAKAASRKLVFIEPQLATLERDAPPGKDWL
HEVKFDGYRMQAHIAGTDVRLLTRTGLDWTEKFGGEIIAELAGLKCSDAIIDGEIVVLAD
SGVSSFALLQQDLSAKRANRFLYYVFDLMRLDGKDLRAEPLVERKQALQELLGKQAENPA
VRFSDHFFEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQEFVIGGYL
PSDKTGRGLRSLLVGYYEGGKLQYAGRVGTGFSAKGATELKNKLDALQAKASPFDKAVPK
GKGLVWVKPELVGEVEFRSWTSDRIIRHASFQGLREDKPAEDVVQEKPKAATGKGKPASS
GGGTMTTSVKLSHPDKLLWPDEKISKQGLLDHYAEVWPRMEQFVVNRPLSLVRAPDGIGG
PRFFQKHASAGMSDRIARMKDPTDGEEILFVRDFDGVAALVQYGVVEIHIWGCTIDKLEQ
PDQIIFDLDPDEGVDVKAVREAALDIRGRLDELSLPNFVKTSGGKGYHVLVPLKPSADWE
AVKTFAHDFAKALEQGAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVAPYSSRAKKGAT
VSMPVTWAEIEAGLAPNAFPIGDKTTLKQLAEADPWVDFFKQGKVLKRG
NT seq 2490 nt   +upstreamnt  +downstreamnt
atggccggcctcgaacaatatcacgccaagcgcgatttcaagaaaacgtcggagccggcg
ggcaaggtcgcacgcacgaaaaagagcgaagcgggcggcatcttcgtcatccacaagcac
gctgcgaccaggctgcattacgatcttcgcctcgagcatggcggcgtgctgtggagctgg
gccgtgacgcgagggccgagccttgatccgcacgaaaagcggctcgccgttcatgtcgag
gatcacccgatcgactatgcgccgttcgaaggcacgatcccgaagggcgaatatggcggc
ggctcggtcatcgtctgggacgaggggacatgggtgcctgagaccgacccggccaaggcg
atgaagaagggccacatcagtttcgagctcaacggccacaaattgcatgggctgtggcat
ctggtgcggctgaagccgcgggcgggcgaaaagcgcgacaactggctcttgatcaagtcc
gacgatgccgcggcgcgcccgggcgaggacattttgaaggagaggccggaatcggtgaag
tcgggcctgacgatcgaagaggtcggcgagggcaaggcggccaagggtaagaagccagaa
gtctggcactccaacaagccggccgccggcaaggcgaaggccgcaagccgcaaactcgtt
ttcatcgagccgcaactggcgacgctggagcgggacgcaccaccgggcaaggactggctg
catgaagtcaaattcgacggctatcgcatgcaggcgcatatcgccggcacggatgtgcgg
ctcttgacccgcaccggcctcgactggacggaaaaattcggcggggagatcattgccgag
ctcgccgggctgaagtgcagcgacgccatcatcgacggcgaaattgtcgtgctggccgac
agcggcgtctcgtccttcgcgctgctgcagcaggatctgtcggcgaagcgggcaaaccgc
ttcctctattacgtgttcgacctgatgcgtctcgacggcaaggatttgcgcgccgagccg
ctggtcgagcgcaagcaggccttgcaggagctgctcggcaagcaggccgagaacccggcg
gtgcgtttctccgaccattttttcgagcccggcaagatcatgctggagcatgcctgcagg
atggggctggaaggcgtcgtgtccaaacgcgccgatgcgccctatcgcagcgggcgcggc
ccgacctgggtgaagtcgaaatgcacggcacggcaggaattcgtcatcggcggctatctg
ccttcggacaagaccgggcgcgggctgcgctcgctgctggtcggctattacgagggcggc
aaactgcagtatgccggtcgtgtcggcaccggtttttccgccaaaggcgcgacggagctg
aagaacaagctcgacgcgctgcaggcgaaggcttcgcccttcgacaaggccgtgccgaaa
ggcaaggggctggtctgggtcaagccggaattggtcggcgaagtggagtttcgcagctgg
acgtcggaccgtataatacgtcatgcctcgttccaggggctgcgcgaggacaagccggcg
gaggacgttgtgcaggaaaagcccaaggcagcgacaggcaagggcaagccggcctcgagc
ggcggcgggacgatgacgaccagcgtaaaactctcgcatcccgacaagctgctatggccc
gacgagaagatctccaagcagggcctgctcgaccattacgccgaggtttggccgcgcatg
gagcagttcgtcgtcaaccggccgctcagcctggtgcgggcgccggacggcatcggcggc
ccgcgcttcttccaaaaacatgcctcggccggcatgagcgacagaatagcccggatgaaa
gacccgacggatggcgaggaaatcctgttcgtgcgagatttcgacggggtggcggcgctc
gtccagtacggcgtggtcgaaatccacatctggggatgcacgatcgacaagcttgaacag
ccggaccagatcatcttcgatctcgaccccgatgaaggtgtcgacgtcaaagcggtgcgc
gaggcggcgctcgatatcaggggcaggctcgacgagctgtcgctgccgaacttcgtcaag
acatcgggcggcaagggctatcatgtgctggtgccgctgaaaccgtcggcggactgggag
gcggtgaagaccttcgcccatgatttcgccaaggcgctcgaacagggtgcccccgaccgc
tacacggcgacgctgtcgaagaaggcgcgcaccgggaaaatcttcgtcgactatctgcgc
aatggcaggggctcgacaacggtcgctccgtattcctcgcgcgccaagaagggcgccacc
gtatcgatgccggtgacctgggccgagatcgaggccggcctggcgccgaacgctttcccc
ataggcgacaagacgacgctgaagcagttggcggaagccgatccttgggtggatttcttc
aagcagggcaaggtgttgaagcgggggtag

DBGET integrated database retrieval system