Microcella humidisoli: NNL39_06465
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Entry
NNL39_06465 CDS
T09551
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mhum
Microcella humidisoli
Pathway
mhum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NNL39_06465 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhum03021
]
NNL39_06465 (rpoC)
03400 DNA repair and recombination proteins [BR:
mhum03400
]
NNL39_06465 (rpoC)
Enzymes [BR:
mhum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NNL39_06465 (rpoC)
Transcription machinery [BR:
mhum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NNL39_06465 (rpoC)
DNA repair and recombination proteins [BR:
mhum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NNL39_06465 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Dynamitin
Motif
Other DBs
NCBI-ProteinID:
UTT61340
LinkDB
All DBs
Position
1356379..1360227
Genome browser
AA seq
1282 aa
AA seq
DB search
MLDAKTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISIDEDGRHADLPGLENELRLEIKTLEGQRDAGIATRMQRLETE
LAELEAEGAKADQKRKVKDAGEKEMGQIRKSFDEQIAQLERVWEDFRTLKVGDLKPEDSV
FQELQDRFGLYFEAHMGAEAIKKRLEAFDLAAESELLHEQIATGKGQKKIRAIKRLKVVN
SFLQTGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVIKRLIDLGHAQNIKSAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTVPTQDMIIGLHHLTTVREGAAGEGR
AFSSVAEAIMAMDQGSLHLNAPVRIRLYGEKFADGRELRETTLGRALFNEQLPADYPYVD
AVADKGAISQIVNDLAERYPKTVVAATLDKVKDAGFYWATRSGVTVALSDVLTPPKKKEI
VAEYEKKAAKIQGQFDKGLTTDDERRRELVELWTEGTKAVNDEMRANFPADNTINRMVTS
GARGNWLQVGNIAGMRGLVSNPRGEIIARPIINSYREGLSVAEYFIATHGARKGLADTAL
RTADSGYLTRRLVDVAQDVIIREEDCGTGKGLDFTIAHEVDGGWVRDDNVENLVFARTLA
TDAVSASGTIVAQAGADVGDVLIDELVAAGVAEIKVRSVLTCESAVGVCAACYGRSLATG
TRVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASAADITQGLPRVTELFEARTPKGAS
PIAESAGRISIDDSGAQLKIVLTPDSGEEEVVYVVSKRARLLVEDGQHVELGHQIFVGTV
DPKEVLRVKGVRAVQQHLVEGVQGVYRSQGVPIHDKHLEVIVRQMLRKVTVVDHGETDLL
PGELVDRSKYNQINRAALAEGKKTASARQEVMGITKASLATESWLSAASFQETTRVLTQA
AMEGKRDPLLGLKENVIIGKLIPAGTGLPAYRNVTVEATEEAKSERYPNRIFADDTALTE
ADLSFVDFDTFSSDDYTPGTYN
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgcaaaaactttcgatgagctccgcatcggcctcgcgaccgctgacgacatc
cgtcgctggtcgcacggtgaggtgaagaagccggagacgatcaactaccgcacgctcaag
cccgagaaggacggcctgttcggcgagcagatcttcgggccctcccgcgactgggagtgc
tcgtgcggcaagtacaagcgggtgcgcttcaagggcatcgtgtgcgagcgctgcggcgtg
gaggtcaccaagtcctccgtgcgtcgcgagcgcatgggccacatcgagctcgccgctccc
gtcacgcacatctggtacttcaagggtgtgccgagccgcctcggctacctgctcgacatg
gcgccgaaagacctcgagaaggtcatctacttcgccgcctacatggtcatctcgatcgat
gaggacggccgtcacgccgacctccccgggctcgagaacgagctgcggctcgagatcaag
accctggagggccaacgcgacgccggcatcgcgacgcgcatgcagcgtctcgagaccgag
ctcgccgagctcgaggcagagggcgccaaggccgaccagaagcgcaaggtgaaagacgcc
ggcgagaaggagatgggccagatccgcaagtcgttcgacgagcagatcgcccagctcgag
cgcgtgtgggaggacttccgcacgctcaaggtcggcgacctcaagccggaggactcggtc
ttccaggagctgcaggaccgtttcggcctgtacttcgaggcccacatgggtgccgaggcc
atcaagaagcgcctcgaggcgttcgacctcgccgccgagagcgagctgctgcacgagcag
atcgccacgggcaagggtcagaagaagatccgcgcgatcaagcgcctgaaggtcgtcaac
tccttcctgcagaccggcaactcgccggccgcgatggtgctcgatgtcgtgccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctgcgccgtcttctcgacctc
ggggctcccgagatcatcgtgaacaacgagaagcgcatgctgcaggaggccgtcgacgcc
ctgttcgacaacggccgccgcggtcgtccggtcacgggcacgggtaaccgtgcgctgaag
tcgctgagcgacatgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggaccgcagctcaagctgcaccag
tgcggtctgccgaagctcatggcgctcgagctgttcaagccgttcgtcatcaagcgcctc
atcgacctgggccacgcgcagaacatcaagagcgccaagcgcatggtcgagcggtcgcgt
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctgaaccgc
gcgcccaccctgcaccgcctcggcatccaggccttcgagcctcagctcgtcgagggcaag
gccatccagctgcacccgctcgtctgcgccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtcggtcgaggctcaggccgaggcccgcatcctcatgctc
gcgtcgaacaacatcctcaagccgtccgacggccgcccggtgacggttcccacgcaggac
atgatcatcggtctgcaccacctcacgaccgtgcgcgagggcgccgccggcgagggccgc
gcgttctcctcggtcgccgaggcgatcatggccatggatcagggctcgctgcacctcaac
gcgccggtgcgcatccgcctctacggcgagaagttcgccgatggtcgcgagctgcgcgag
acgacgctgggccgcgcgctgttcaacgagcagctgccggccgactacccctacgtggat
gcggtggccgacaagggcgcgatctcgcagatcgtcaacgacctcgccgagcgctacccc
aagacggtggtcgcggcgacgctcgacaaggtgaaggacgccggcttctactgggcgacc
cgctcgggtgtgaccgtcgcgctcagcgacgtgctcaccccgccgaagaagaaggagatc
gtcgccgagtacgagaagaaggcggcgaagatccagggccagttcgacaagggtctgacg
accgatgacgagcggcgccgcgagctggtcgagctgtggacggagggcacgaaggccgtc
aacgacgagatgcgcgccaacttcccggccgacaacacgatcaaccgcatggtcacctcg
ggtgcccgtggtaactggctgcaggtcggcaacatcgccggtatgcgcggtctcgtgtcg
aacccgcgcggtgagatcatcgcccgcccgatcatcaactcgtaccgcgagggcctgtcg
gtggcggagtacttcatcgccacgcacggtgcccgcaagggtctggccgacaccgctctg
cgcacggccgactcgggctacctgacccgtcgactcgtcgacgtggcgcaggacgtcatc
atccgcgaggaggactgcggcacgggcaagggtctcgacttcacgatcgcgcacgaggtc
gacggcggttgggttcgcgacgacaatgtcgagaacctcgtcttcgcccgcacgctcgcg
accgacgcggtcagcgcctcgggcacgatcgtcgcgcaggccggtgccgatgtcggcgac
gtgctgatcgacgagctcgtcgcggcgggtgtcgccgagatcaaggtgcgctcggtgctg
acgtgcgagtcggcggtcggcgtctgcgccgcctgctacggccgctcgctggccacgggc
acgcgcgtcgacctcggtgaggccgtcggcatcatcgcggcccagtcgatcggtgagccc
ggaacgcagctcacgatgcgcaccttccacaccggtggttcggcctccgcggccgacatc
acgcagggtcttccccgcgtcaccgagctgttcgaggcgcgcacgccgaagggcgcgagc
cccatcgccgagagcgccggccgcatcagcatcgacgacagcggtgctcagctgaagatc
gtgctcacgccggacagtggcgaggaggaggtcgtgtacgtcgtctcgaagcgcgcgcgc
ctgctcgtcgaggacggccagcacgtcgagctgggtcaccagatcttcgtcggcacggtc
gacccgaaggaggtgctgcgtgtgaagggcgtccgcgccgtgcagcagcacctcgtcgag
ggcgtgcagggggtctaccgctcgcagggcgtgccgatccacgacaagcacctcgaggtc
atcgtgcgtcagatgctgcgcaaggtcaccgtcgtcgaccacggcgagaccgatctgctg
ccgggcgagctcgtcgaccgttcgaagtacaaccagatcaaccgcgccgcgctggccgag
ggcaagaagaccgcctcggcccgccaggaggtcatgggcatcaccaaggcctcgctcgcg
accgagtcgtggctgtcggccgcgtccttccaggagaccacccgcgtgctcacgcaggcg
gccatggagggcaagcgcgacccgctgctggggctcaaggagaacgtgatcatcggcaag
ctgatcccggccggtaccggtctgcccgcgtaccgcaacgtcacggtcgaggcgacggag
gaggcgaagtccgagcggtaccccaaccgcatcttcgccgacgacaccgccctgaccgag
gccgacctgtcgttcgtcgacttcgatacgttctcgagcgacgactacacgccgggcacg
tacaactag
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