Microbulbifer hydrolyticus: GTQ55_05040
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Entry
GTQ55_05040 CDS
T06404
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
mhyd
Microbulbifer hydrolyticus
Pathway
mhyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GTQ55_05040 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhyd03019
]
GTQ55_05040 (rhlB)
Enzymes [BR:
mhyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GTQ55_05040 (rhlB)
Messenger RNA biogenesis [BR:
mhyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GTQ55_05040 (rhlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QHQ38420
UniProt:
A0A6P1T9Z9
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All DBs
Position
1195097..1196647
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AA seq
516 aa
AA seq
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MIGKFFRRSSDKSESTAGGEKAASSRPDKGPANPRSGASGKEAEAGSERSRNRRRGSGGK
GGGKGDDGGRGRSAPKKAPQKPWTLDEFQVPEEEGKVRFHDLDLPLPLMHAIADLGFQYC
SPIQGQSLPHTLNGHDMVGKAQTGTGKTAAFLITVIDDLLKHPFEGERYAGEARALIIAP
TRELVMQIADDAKGLCKYTDLEIHTLVGGMDYQKQQKALNERLVDILVATPGRLLDFVSK
RDCFLDQTEILVIDEADRMLDMGFIPDVRRIVRQTPRKTHRQTMFFSATFTPEVDDLVEQ
WTSEPVIVEIEPEHVATDTVTQHVYLVSGDEKYPLLFNIVQKDEVESLIVFANRRDQCRR
LHENLVAHGIAAGLLSGEVAQNKRVRTLEDFKTGKSKVLVATDVAGRGIHIDGISHVVNY
TLPEEPEDYVHRIGRTGRAGKSGTSISFACEDDAMRLEPIEKLLGSKLTCEVPPEELLVE
PPKVHVKRSSGGDRNDRGGNRDGGRGGRRGGGRPRR
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
ttgataggtaagtttttccgtcggtcgtctgataaatctgaatccactgccggaggcgag
aaagccgcctcttcacggcctgataagggccccgcaaacccgcgttccggtgcttcaggc
aaagaggccgaagctggcagcgagcgctcgcgcaatcgtcgccgtggcagcggcggcaag
ggtggcggcaagggcgacgatggtggccgcgggcgcagcgcgccgaagaaagcgccgcag
aagccctggactctcgacgagttccaggttcctgaggaagagggcaaggtacggtttcac
gacctggacctgccgctgccgctgatgcacgccatcgccgacctcggtttccagtattgc
tcgcccatccagggccagtctcttccccataccctcaacggtcacgacatggtgggcaag
gcccagacggggaccggcaagacggccgccttcctgattacggtaatcgacgacctgctc
aagcacccgtttgaaggcgagcgctatgcgggtgaagcgcgtgcgctgattatcgcgccc
acccgcgagctggtgatgcagatcgctgacgacgccaagggcctgtgcaaatacacggat
ctggaaatccatacgctggtcggcggcatggactaccagaaacagcagaaggcattgaac
gaacgtctggtggatattctggtggccacccccggccgcctgctggatttcgtcagcaag
cgcgactgcttcctcgaccagaccgagatcctggtgatcgacgaagccgaccgcatgctg
gacatgggctttatccccgatgtgcgccgcatcgtgcgccagactccccgcaagacccac
cgccagaccatgttcttctccgccactttcaccccggaagttgacgatctggtggagcag
tggacctcggagccggtgatcgtcgaaatcgagccggagcatgtcgctaccgatacggtc
acccagcatgtgtacctggtatccggtgacgagaagtacccgctgctgttcaatattgtg
cagaaagatgaggtggaaagcctgatcgtgtttgccaaccgccgcgaccagtgtcgccgc
ctgcacgaaaacctggtggcccacggtattgccgcggggctgctgtctggtgaagtggca
cagaacaaacgtgtgcgcaccctggaagatttcaagacgggtaaatccaaggtgctggtg
gccacggatgtggccggtcgcggtattcacatcgacggcatcagccacgtggtgaattac
accctgccggaagagccagaggattatgtacaccgtatcggccgcaccgggcgcgcgggc
aagagcggtacttccatcagctttgcctgtgaagacgatgccatgcgcctcgagcctatc
gagaagttgctgggcagcaaactgacctgtgaagtgccgccggaagagctgctggtcgag
ccacccaaggtgcatgtgaagcgtagcagtggcggcgatcgcaatgatcgtggtggcaat
cgtgatggcggccgcggcggacgccgtggcggtggacgcccacgccgctaa
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