Microbacter sp. GSS18: P0L94_02370
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Entry
P0L94_02370 CDS
T08893
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mica
Microbacter sp. GSS18
Pathway
mica03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mica00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P0L94_02370 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mica03400
]
P0L94_02370 (mfd)
Enzymes [BR:
mica01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P0L94_02370 (mfd)
DNA repair and recombination proteins [BR:
mica03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P0L94_02370 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
MFD_D3
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
WES64927
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All DBs
Position
510331..513969
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AA seq
1212 aa
AA seq
DB search
MTVPGIVRALEQAESFRDAVTAASTDADFSLVEGLDAPLLAALVEHRAGTDRPQAVLVVA
PTGRRAESLGPALESVLPGARVLHFPAWETLPHERLSPSAETVGRRLEILHEIARWDGSS
PLVVTASVRAAIQPIAPGLGETEPLHLRVGGRGTELSDVVVQLVELAYHRVDMVSRRGEF
AVRGGILDVFPPTAAHPYRVEFFGDEVDQIRAFSVADQRSLPGDVDDVVLLAARELLLTD
DVRERARRLRDRLPGLGAMLEKMGEGIPVEGMESLMPAVLDGLVTLVHAMPERSGVAVVD
PERCVTRAITLGETNREFLDAAWSAATAGAETPVDTSAVLGTGLSSGDFVALPVLREVAR
ERGGAWWTLSAFDSGAADAAAEGLIDVDTALEHAAMTRVAAAPVPSFHGSVDGAIDHVGA
LLADGWRVAVVAGGTGLVERAADVLADRGIGARRVEDLDGVPEPGVVHLAVAALESGFES
AETKFAVLTESEFYGRTIGGDQRVVKKLASRRRNVVDPLQLKPGDFVVHATHGIGKFVEL
IQREVSSGGRNAVKTQREYLVLEYAPAKRGYPGDKLFVPTDQLDQLSRYVGGEAPALSKM
GGSDWSQAKSKARKAVRDIAVELVKLYSARVAAKGHAFGPDTPWQRELEEAFPFAETPDQ
LQTIDEIKADMEKSIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQH
LETFTERFAGFPVKVKALSRFQTDKQARDTIAGLTDGTVDMVIGTHRILTEKVVFKDLGL
MIIDEEQRFGVEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLQTPPEDRHP
ILSYVGARNDKQIAAAIRRELLREGQVFYVHNRVQSIQRVAAHLAELVPEARIAVAHGQM
GEHQLEQVVDDFWERKADVLVSTTIVETGLDISNANTIIIDRADKYGLSQLHQLRGRVGR
ARERAYAYFLYDETKPLSETAADRLETIAVNNDLGSGMQVALKDLEIRGAGNLLGAEQAG
HIAGVGFDLYLRMIGEAVATFRGEETEGPAELRLELPVEARIPESYIDSERLRLEAYQKL
SAAAAATAKDDAIDLVVEELADRYGELPEEGAGLIAMARLRRRAAQAGLSDVVAMGPNLR
IAPAHLPDSMRVRLQRLYPKAKLLAGGDALVVPLPTAAGERVADADLIAWVGQLLDQLWP
KKEPAAASGSAG
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
gtgacagttcccgggatcgtgcgcgccctcgagcaggcagaatcgtttcgggacgcggtg
accgcggcgtccacggacgccgacttctcgctggtcgaaggcctggacgccccgctcctc
gccgcactcgtcgagcatcgcgcgggcaccgaccgcccgcaggccgtgctggtcgtcgcc
cccaccggacgccgcgccgagtcactcgggccggcgctggaatcggtgctccccggcgcc
cgcgtgctgcacttcccggcatgggagacgctgccgcacgagcggctgagcccgtccgcc
gagacggtggggcggcgcctcgagatccttcacgagatcgcccgctgggacggctcgtcg
ccgctggtggtgaccgcatcggtgcgggcggcgatccagccgatcgcccctggactcggt
gagaccgaaccgctgcacctgcgcgtcggcggtcgcgggaccgagctctccgacgtcgtc
gtgcagctggtcgagctcgcgtaccaccgcgtcgacatggtgtcgcgccgcggcgagttc
gcggtccgcggcggcatcctcgacgtcttcccgcccacggccgcgcacccttaccgtgtg
gagttcttcggcgacgaggtcgaccagatccgagccttctcggtcgccgatcagcgatcc
ctgcccggtgacgtcgacgacgtcgtcctgctcgccgcgcgcgaactgctgctgaccgat
gacgtccgcgagcgcgcccgcaggctgcgagaccggctgccggggctgggcgcgatgctc
gagaagatgggcgagggcatccccgtcgagggcatggaatcgctcatgcccgccgtcctg
gacggcctcgtcacgctcgtgcacgcgatgcccgagcgctcgggggtcgccgtcgtggac
cccgaacgctgcgtcacgcgggcgatcacgctcggcgagacgaaccgcgagttcctcgac
gcggcgtggagcgccgccacggccggagccgagacccccgtggacacctctgcggtgctc
gggacggggctgtcctcgggcgacttcgtcgcgctgcccgtgctgcgcgaggtcgcccga
gagcgcggcggcgcgtggtggaccctcagcgccttcgactccggagcggcggatgccgcc
gccgagggtctcatcgacgtcgacaccgccctcgagcacgcggccatgacccgcgtcgca
gccgcacccgtcccgtcgttccacggcagcgtcgacggcgcgatcgaccacgtcggggcg
ctgctggcggacggctggcgcgtcgccgtcgtcgccggaggaacgggcctggtcgagcgc
gcggccgacgttctggccgatcgcggcatcggcgcacggcgcgtggaggatctcgacggc
gtccccgagcccggcgtcgtgcatctggccgtcgccgcgctcgagagcggattcgagtcc
gccgagacgaagttcgccgtgctgacggaatcggagttctacgggcgtacgatcggcggc
gaccagcgggtcgtcaagaaactcgcgtcgcgccgccgcaacgtcgtcgacccgctgcag
ctcaagcccggcgacttcgtggtgcacgcgacgcacggcatcggcaagttcgtcgagctc
atccagcgcgaggtgtcctcgggaggccgcaacgccgtcaagacccagcgcgagtacctc
gtgctggagtacgccccggccaagcgcggatacccgggcgacaagctcttcgtcccgacc
gaccagctcgaccagctctcacgctacgtcggcggcgaggcccccgctctgtccaagatg
ggcggcagcgactggtcgcaggccaagagcaaggcgcgcaaggcggtgcgcgatatcgcc
gtggagctggtgaagctgtactcggcgcgcgtggcggccaaggggcacgccttcggcccc
gacacgccctggcagcgcgagctcgaagaggccttcccgttcgccgagacgcccgaccag
cttcagacgatcgacgagatcaaggccgacatggagaagtcgatccccatggaccggctg
ctgtccggcgatgtcggcttcggcaagaccgaggtcgcggtgcgggcggcgttcaaggcg
atccaggacggcaagcaggtcgcgatgctcgtgccgaccaccctgctggtcaagcagcac
ctcgagaccttcaccgagcgcttcgcgggattcccggtcaaggtcaaggcgctgtcgcgg
ttccagaccgacaagcaggcccgggacacgatcgcggggctgacggacggcaccgtcgac
atggtgatcggcacgcaccgcatcctcaccgagaaggtggtcttcaaggacctcggcctc
atgatcatcgacgaggagcagcgcttcggcgtcgagcacaaggacgcgctgaagaagctc
aagacgaacgtcgacatcctcgccatgagcgccacgcccatcccgcgcacgctcgagatg
gcggtcaccggcatccgcgagatgtccacgctgcagaccccgcccgaggaccggcatccg
atcctgtcctacgtcggcgcccgcaacgacaaacagatcgccgcggcgatccgtcgcgaa
ctgctgcgcgagggacaggtcttctacgtccacaaccgcgtgcagtcgatccagcgggtc
gccgcgcacctggccgagctggtgcccgaggcgcgcatcgcggtcgcccacggtcagatg
ggcgagcaccagctcgagcaggtcgtcgacgacttctgggagcgcaaggccgacgtgctc
gtctcgacgacgatcgtcgagaccgggctcgacatctccaacgcgaacaccatcatcatc
gaccgcgccgacaagtacgggctcagtcagctgcaccagctgcgggggcgcgtggggcgt
gcgcgcgagcgcgcgtacgcgtacttcctctacgacgagacgaagccgctgagcgagacc
gccgccgaccggctcgagaccatcgcggtcaacaacgacctcggcagcggcatgcaggtg
gcgctgaaggacctcgagatccgcggagccggcaacctgctgggcgccgaacaggccggc
cacatcgcgggggtcggattcgacctgtacctgcgcatgatcggcgaggcggtcgcgacc
ttccgcggcgaggagaccgagggcccggccgagctgcggctggagctgcccgtcgaggcg
cgcatccccgagtcgtacatcgacagtgagcggctgcgcctggaggcctaccagaagctg
tcggcagccgcggcggccaccgccaaggacgacgccatcgacctcgtcgtcgaggagctg
gccgaccgctacggggagctccccgaggagggcgccgggctcatcgcgatggcgcgcctg
cggcgccgtgccgcgcaggccggtctgtcggacgtcgtcgcgatgggacccaatctgcgc
atcgcgccggcgcacctgccggactccatgcgcgtgcggctgcagcggctgtacccgaag
gcgaagctgctcgccggcggcgacgccctcgtcgtgccgctgccgaccgcggcgggggag
cgcgtggccgacgccgacctcatcgcatgggtcgggcagctgctcgaccagctgtggccg
aagaaggagccggcggcggcgagcggcagcgcgggctga
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