Micromonospora sp. B006: MicB006_0496
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Entry
MicB006_0496 CDS
T05583
Name
(GenBank) ATP-dependent DNA ligase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
micb
Micromonospora sp. B006
Pathway
micb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
micb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MicB006_0496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
micb03400
]
MicB006_0496
Enzymes [BR:
micb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MicB006_0496
DNA repair and recombination proteins [BR:
micb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MicB006_0496
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AXO32803
UniProt:
A0A385ALC7
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All DBs
Position
497372..498310
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AA seq
312 aa
AA seq
DB search
MPGAPLKPMLATTGQLPAGAAWAYEFKWDGVRALADISRGDRHFYARSGVEITTAYPELL
NLAEQVGDALLDGEVVLFTDGQPSFTALAERMHVRNPAKAARLAATVPVTYMIFDLLRLD
GEDLTARPWRERRAALEALGLGAARWAVPPVFGDGPATYAAAGEHGLEGVMAKRVDSLYR
PGVRSPDWVKVKLEVTGDFVVGGWRPGARRVGGLLVGVPGPDGRLIYRGRVGGGIGAAIE
RELLRELEPLRATASPFAAGVPREDARGAIWVSPRIVVEVKYGQRTPDGRLRFPRILRLR
PDKPPEEVDDAG
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggcgcgccgttgaagccgatgctcgcgacgaccgggcagctcccggccggcgcc
gcctgggcgtacgagttcaagtgggacggggtccgcgcgctcgccgacatctcacgcggc
gaccggcacttctacgcccgctccggcgtcgagatcaccaccgcgtacccggaactgctc
aacctggccgagcaggtcggcgacgcgctgctcgacggcgaggtggtgctcttcaccgac
gggcagccctcgttcaccgcgctcgccgagcggatgcacgtgcgcaacccggccaaggcg
gcgcggctcgcggcgaccgtacccgtcacgtacatgatcttcgacctgttgcggctcgac
ggcgaggacctgaccgcccggccgtggcgggagcggcgggcggcgctggaggcgctcggg
ctcggcgccgcccggtgggcggtgccgccggtcttcggcgacggcccggccacctacgcg
gcggccggcgagcacgggctggagggggtgatggccaagcgggtcgactcgctctaccgg
cccggcgtgcgctccccggactgggtgaaggtcaagctggaggtcaccggcgacttcgtg
gtcggcggctggcggcccggcgcgcgccgcgtcggcggcctgctggtcggcgtgcccggc
ccggacgggcggctgatctaccgggggcgggtcggcggcgggatcggcgcggccatcgaa
cgggaactgctgcgcgagctggaaccgctgcgggccaccgcgtcgccgttcgccgccggg
gtgccgcgcgaggatgcccgcggcgcgatctgggtaagtccccggatcgtggtggaggtc
aagtacggccagcgcacgccggacggccggctgcgcttcccgcgcatcctgcgcctgcgc
ccggacaagccgcccgaggaggtcgacgatgccggctga
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