Micromonospora sp. B006: MicB006_0923
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Entry
MicB006_0923 CDS
T05583
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
micb
Micromonospora sp. B006
Pathway
micb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
micb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MicB006_0923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
micb03400
]
MicB006_0923
Enzymes [BR:
micb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MicB006_0923
DNA repair and recombination proteins [BR:
micb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MicB006_0923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
SLFN-g3_helicase
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXO33227
UniProt:
A0A385AMT9
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All DBs
Position
918973..922629
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTGLFSAALADPGLARARDLARSGAAQVDGLDLTAPAALRPFAVAAVAADEPAGGAGRP
VLAVTATTREADDLASALGSLLPPEQVAVFPSWETLPHERLSPRSDTVGRRLAVLRRLAH
PDAADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEPVQLAAGDEADLEEVARRLTDMAYA
RVDLVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEGVAQMWA
PPCRELLLTPAVRERAAALAAEHPELAEILDKLAEGIPVEGMESLAPALIGADALELLVD
CMPAGTHVLLCDPERIRTRAHDLVRTSEEFLQASWAAAAVGGQAPVDLGAAAFKTLAEVR
TAARALRQPWWTLAPFGLVESDAAPARQPWEDAPAEVDVTPDDAIAVSLAAQPAPLYHGE
TARVVDDLKRWAGEGWSIALVFEGHGPAQRAVEVLRDAGLGARLTEEVPTAPAPGELLVS
CGCLTAGFVDEASKFVLLTGNDVTGGRGTSTRDMRKMPSRRRNTIDPLELKAGDFVVHEQ
HGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLH
KMGGSDWQKSKARARKAVREIAAQLIQLYAARKASKGHNFAPDTPWQRELEDAFPWQETP
DQLAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQ
QHYNTFAERMSQFPVSIRQLSRFQTPKETEQTLEMAAAGTVDIVIGTHRLLQASTRFKSL
GLVIIDEEQRFGVEHKEHLKTLRASVDVLAMSATPIPRTLEMAITGIREMSTIATPPEER
HPVLTFVGAYDDRQVAASIHRELLRDGQVFYLHNRVESIEKTARKLRELVPEARVAVAHG
QMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGRV
GRGRERAYAYFLYPREKPLTENAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQ
SGHIEGVGFDLYVRMVGEAVSAFKGESTEEETEVKVDLPIDAHLPHDYIGVERLRLEMYR
KLAEARDAERLREVVAEMTDRYGEPPAPVQNLVAVAQFRLLARRYGLTDVSMQGKHIRFG
PLPLPDSKQMRLKRYHPDSVYKQALDQVSVPRPSTRRIGGEPLRDQALLEWCGQLLADVL
GKPEELAGSASPAVASGR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccggactcttctccgccgccctggccgacccggggctggcccgggcgcgtgac
ctggcgcgctccggtgccgcccaggtcgacgggctcgacctgaccgcccccgccgcgctg
cgcccgttcgcggtggccgcggtcgccgccgacgagccggccggcggcgcgggccgcccg
gtgctcgcggtcaccgccaccacccgggaggccgacgacctggcctccgcgctgggcagc
ctgctgccgccggagcaggtggcggtcttcccgtcctgggagacgctgccgcacgagcgg
ctctcgccccgctccgacaccgtcgggcgtcggctggccgtgctgcgccggctggcccac
ccggacgcggccgacgcgcacggccgcaccgggccgctgcgggtcgtcgtcgcgccggtc
cgctcgctgctccagccgcagctcaagggcctcggggacctggaaccggtgcagctcgcc
gccggtgacgaggccgacctcgaagaggtcgcccgccggctcaccgacatggcgtacgcc
cgggtcgacctggtcaccaagcgcggcgagttcgcggtacgcggcggcatcctggacgtc
ttcccgcccaccgacgagcacccgtcccgggtcgagttctggggcgacgaggtggaggag
atccgcacgttcgcggtcgccgaccagcgcaccatcgagggcgtggcgcagatgtgggcg
ccgccgtgccgcgagctgctgctgactccggcggttcgggaacgggccgccgcgctcgcc
gccgagcaccccgagctggccgagatcctggacaagctcgccgagggcatcccggtcgaa
gggatggagtcgctggcccccgcgctgatcggcgccgacgcgctggaactgctcgtcgac
tgcatgccggccggcacccacgtactcctctgcgaccccgagcgcatccgcacccgcgcg
cacgacctggtccgtacctcggaggagttcctccaggccagctgggccgcggccgccgtc
ggcggccaggccccggtcgacctcggcgccgccgccttcaagaccctggccgaggtacgc
acggcggcccgcgccctgcgccagccctggtggacgctcgccccgttcggcctggtcgag
tcggacgcggcgccggcccggcagccctgggaggacgcgccggccgaggtcgacgtcacc
cccgacgacgccatcgcggtgagcctggccgcccagccggccccgctctaccacggcgag
accgcccgggtggtcgacgacctcaagcgctgggccggcgagggctggtcgatcgcgctg
gtcttcgaggggcacggtcccgcccagcgggccgtcgaggtgttgcgcgacgccggtctc
ggcgcccggctcaccgaggaggtgcccaccgcgcccgcgcccggcgagctgctcgtgtcg
tgcggctgcctgaccgccggcttcgtcgacgaggcgtcgaagttcgtgctcctgaccggc
aacgacgtcaccggtggccggggcacctccacccgcgacatgcgcaagatgcccagccgg
cggcgcaacaccatcgatccgctggagctgaaggccggcgacttcgtggtgcacgagcag
cacggcatcggccggtatgtcgagctggtgcagcgcaccgtgaacggcgccagccgcgaa
tacctggtcatcgagtacgcgccgagcaagcgcggccagcccggcgaccgcctcttcgtc
cccaccgaccagctcgaccagctttcccgctacgtcggcggcgagcagcccacgctgcac
aagatgggcggctcggactggcagaagtccaaggcgcgggcgcgcaaggcggtacgcgag
atcgccgcgcagctcatccagctctacgccgcgcgcaaggcgtccaaggggcacaacttc
gcacccgacaccccgtggcagcgggagctggaggacgcgttcccctggcaggagacgccc
gaccagctcgccgccatcgaggaggtcaagcgggacatggagcagaccgtcccgatggac
cggctgatctgtggcgacgtcggctacggcaagaccgagatcgcggtacgggcggcgttc
aaggcggtgcaggacggcaagcaggtggcggtgctggtgcccaccacgctgctcgtgcag
cagcactacaacacgttcgccgagcggatgagccagttccccgtgtcgatccggcagctg
tcccggttccagacgccgaaggagaccgagcagacgctggagatggccgccgccggcacc
gtcgacatcgtcatcggcacccaccggctgctccaggcgtccacccggttcaagtccctc
gggctggtcatcatcgacgaggagcagcggttcggcgtcgagcacaaggagcacctgaag
acgctccgtgcctcggtcgacgtgctcgccatgtcggccaccccgatcccgcgcacgctg
gagatggcgatcaccggcatccgggagatgtccaccatcgccaccccgccggaggagcgg
cacccggtgctcacgttcgtcggcgcgtacgacgaccggcaggtggccgcctccatccac
cgcgagctgctgcgcgacggccaggtcttctacctgcacaaccgggtcgagtcgatcgag
aagacggcccgcaagctgcgggagctggtgcccgaggcccgggtcgcggtggcgcacggc
cagatgggcgaggaagcgctggagaaggtgatggtcggcttctgggagaaggagttcgac
gtcctggtctgcaccacgatcgtcgagtccggcatcgacatcccgaacgccaacacgctc
atcgtcgagcgggccgacctgctcggcctggcccagctgcaccagatccgcggccgggtc
ggccggggccgggagcgggcgtacgcgtacttcctctacccgcgggagaagccgctcacc
gagaacgcgcacgagcggctcgccacgatcgcccagcacaccgaactcggcgcgggcatg
tacgtggcgatgaaggacctggagatccgcggcgccggcaacctgctcggcggcgagcag
tccggccacatcgagggcgtcggcttcgacctgtacgtccggatggtcggcgaggccgtc
tccgccttcaagggcgagagcacggaggaggagaccgaggtcaaggtcgacctgccgatc
gacgcgcacctgccgcacgactacatcggggtggagcggctgcgcctggagatgtaccgc
aagctcgccgaggcccgcgacgccgagcggctgcgcgaggtggtcgccgaaatgaccgac
cggtacggcgagccgcccgccccggtgcagaacctggtcgcggtggcgcagttccggctg
ctggcccgccggtacgggctgaccgacgtgtcgatgcagggcaaacacatccggttcggc
ccgctgccgctgcccgactcgaagcagatgcggctcaagcgctaccacccggactcggtc
tacaagcaggcgctcgatcaggtcagcgtgccccggcccagcacccggcggatcggtggc
gagccgcttcgcgaccaggcgctgctggagtggtgcgggcagctcctcgcggatgtgctc
ggcaagcccgaggagctggccggttctgccagccccgcagtggcgagcggaaggtga
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