Microbulbifer aggregans: AUP74_02401
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Entry
AUP74_02401 CDS
T04560
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
micc
Microbulbifer aggregans
Pathway
micc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
micc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AUP74_02401 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
micc03400
]
AUP74_02401 (mfd)
Enzymes [BR:
micc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AUP74_02401 (mfd)
DNA repair and recombination proteins [BR:
micc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AUP74_02401 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
AAA_30
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AOS97803
UniProt:
A0A1C9W9M4
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All DBs
Position
complement(2737957..2741448)
Genome browser
AA seq
1163 aa
AA seq
DB search
MTSLNPLSPPEFLSATDRQYWGQLCGSAAALAILSAAQRRDTPVLLVTRDSQEAHRLEVQ
LKFFNKSSRDRAGASEGGEELEIIHFPDWEILPYDTFSPHQDIISDRLATLYRLPRMQKG
IVIAPVSTLMHRLAPREYISGNALLLEEGQKFDLATQRRALEQAGYHCVDTVYEHGEFAV
RGSLMDLFPMGSRLPYRIDLFDDEIESLRTFDPETQRTVERVDSVQLLPAREFPMHKAAL
SNFLAHWHEAFECDPANVPIYQDISAGIAPAGIEYYLPLFFGGDCASLFDYLPEGSAAFL
QGDIQKPLENFWREVNNRYESRRGDLSRPILEPAQILLRQDEFNSAIKNLPRAIFSENTL
EEAAGHYNFASQPPPNLPVDGKAEQPLGKLEAYLAGHSGRVLFCAESGGRREALLDLLKG
IRLKPTPFDSWAEFLDSDTTHGIAVAPIDQGLCLDSPAINVIAEPQLFGERVLQQRRRKK
AKDDAENVVKNLAELRIGSPVVHIDHGVGRYRGLQSLDIDGQPAEFLTLEYADEAKLYVP
VASLHLISRYSGADEALAPLHKLGSEQWQKAKRKAAEKVRDAAAELLDIYARREARVGHA
FDNPGLAYREFSAGFPFEETPDQQVAIEAVVADMLSAKPMDRLVCGDVGFGKTEVAMRAA
FVAAHAGKQVAMLVPTTLLAQQHFQSFQDRFADWPVNVEVISRFRSGKEVDSVKERVADG
KVDILVGTHKLLQSDLDFKNLGLLIIDEEHRFGVRQKERLKSLRAEVDILTMTATPIPRT
LNMAMSGIRDLSVIATPPARRLSVKTFVRQRDDALIKEAILREILRGGQVYFLHNEVKSI
ERIARELEALVPEARIATGHGQMRERELEQVMSDFYHKRFNVLICTTIIETGIDVPSANT
ILIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPGKRSMTSDAVKRLEAISEAQDLGAG
FTLATHDLEIRGAGELLGEEQSGQIQSVGFNLYMEMLDRAVKAIREGKTPNIDEPLESTA
VDVNLRVPALIPEDYLPDVHGRLIMYKRIANAATREELRELQVEMIDRFGLLPEPVKHLF
RTTEIKLQANTMGIRKLEASAARGRIEFSEATSVDPLTLVKLVQNQPGVFQLAGANQLTF
ALDESGPEERLAQVTGVLEQLAQ
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgacctctctgaaccccctatctccaccggaatttctctcagcaacagatcgccagtac
tgggggcagctctgcggctcggccgccgcactggccatactgagcgcggcccagcggcga
gatacccctgtgctcctggtcacccgcgacagccaggaagcacaccggctggaggtgcag
ctgaaattttttaacaaaagttcgcgagatagggctggcgccagcgagggcggcgaggag
ctggagatcatccatttcccggactgggaaatccttccgtacgacactttctccccgcac
caggacatcatttccgaccgcctcgcgacgctttaccgactgccccgcatgcaaaagggc
atcgtgatcgcgccggtcagcacgctcatgcacaggctggcaccgcgggaatatatttcc
ggcaatgcactgttgctggaggaagggcagaaattcgatctggccacacagcgccgtgcg
ctcgagcaggcgggctaccactgcgtcgacactgtctatgagcacggcgaatttgccgtc
cgcgggtccctgatggacctgttccccatgggcagccgcctgccctaccggattgacctg
ttcgatgacgagatcgagtcactgcgcacctttgacccggaaacccaacgaaccgtcgag
cgggtggattcagtgcagctgctaccggcgcgggaattcccgatgcacaaggcggccctg
tccaactttctcgcccactggcacgaagcgttcgagtgcgatccagccaatgtgcccatc
tatcaggatatcagcgccggtatcgcacccgcgggcattgaatactacctgccgctcttt
tttggtggcgactgcgccagcctgttcgactacctgcccgagggcagtgcagcatttctc
cagggggacatacaaaagcctctggaaaacttttggcgtgaggtcaacaaccgctacgaa
agccgccgcggcgacctcagcagaccaattctagaaccggcccagattcttctccgtcag
gacgaattcaacagcgcaataaaaaacctgccacgggcaattttttccgaaaacaccctg
gaagaagctgccggccactacaacttcgccagccagccgccacccaacctgccggtagac
ggcaaagcagagcagcctctgggcaagctcgaggcttacctggccggacactccggtcgc
gtgttgttttgcgctgagtcaggtggtcgccgggaggcactgctggacctcctgaaaggg
attcggttgaaaccgacccccttcgactcgtgggcggaattcctcgacagcgacaccacc
cacgggatcgctgtggccccaatagaccagggactttgcctggactcccccgccatcaac
gtcatcgccgagccacagctgtttggcgagcgggtgctgcagcagcgccgacgcaagaag
gccaaggacgacgcagagaatgtggtcaagaacctggccgagctgcgcatcggttctccc
gtcgtacatatcgatcacggcgtcggccgctatcgcggactccagagcctggatatcgat
ggccagccggcggaatttctgaccctcgaatacgctgacgaggccaaactctacgtgccg
gtcgcgagcctgcacctgatcagccgctactccggcgccgacgaggccctggcgcccctg
cataaactcggcagcgagcagtggcagaaggcaaagcgcaaagcagcggaaaaagtgcgc
gacgcggcggccgagctgctggacatctacgcccgccgggaggccagggtcggacatgcc
ttcgacaatccggggctggcataccgcgaattctcggcgggtttcccgttcgaggaaacg
cccgaccagcaggtggccatcgaggccgtcgtcgccgacatgctatccgcgaaacccatg
gaccgacttgtctgtggtgacgtgggcttcggcaagaccgaggtggccatgcgcgcggcg
tttgtcgctgcccatgccggcaaacaggtcgccatgctggtgcccaccaccctgctcgcc
cagcagcacttccaatctttccaggaccgctttgccgactggccggtaaatgtcgaggtg
atctcccgctttcgctcaggaaaggaagtggacagcgtcaaagagcgggtggccgatggc
aaagtggacatcctggttggcacccacaagttgctgcagagcgacctggacttcaaaaac
cttggcctgctgatcatcgatgaggagcaccgcttcggagtgcggcagaaggagcgacta
aagagcctgcgggcagaagtggacatcctgaccatgaccgcgactcccatcccccgcacc
ctgaatatggccatgtcgggtatccgagacctgtcggtgatcgccaccccaccggcccga
cgcctgtcggtgaagacatttgtccgccagcgggacgacgcgctgatcaaggaggcgatc
ctgcgggagatcctccgcggcggtcaggtgtacttcctgcacaacgaagtgaagagcatc
gagcgcatcgcccgcgagctcgaggctctggtacccgaggcgcgtatcgcaaccggccac
ggccagatgcgcgagcgggagctcgaacaggtgatgagcgacttctatcacaaacgcttc
aacgtgctgatttgcaccacgatcatcgaaacaggcatcgacgtaccgagtgccaacacc
attctgatcgagcgcgcagacaagttcgggcttgcccagctgcatcagttgcgcggtcgt
gtgggccgctcccaccaccaggcctatgcctacctgctgacaccgggtaagcgctccatg
accagtgacgcagtcaaacgcctggaagccatcagtgaggcccaggacctgggggctggc
tttaccctcgccacccacgacctggaaatccgcggtgccggcgagctgctgggcgaggag
cagagcggccagatccagagcgtcggcttcaacctctatatggagatgctggaccgggcg
gtcaaagccatccgtgagggcaagacgccaaacatcgacgagccgctggaatccacggcg
gtggacgtcaacctgcgggtaccggcgctgattcccgaggattacctgcccgatgtccac
ggccggctcatcatgtacaaacgcatcgccaatgccgccacccgtgaggagttgcgggag
ctgcaggtagagatgatcgaccgctttgggctgctgccggaaccggtcaaacacctcttc
cggacgactgaaatcaagctgcaggccaacaccatgggcatccgcaagctggaggcctcc
gctgcccgcggccgcatcgagttctcggaggccaccagcgtcgacccactgacactagtg
aagctggtacagaaccagccgggcgtgtttcagctggccggcgccaaccagctgaccttc
gccctggacgaaagcggccccgaggagcggctggcacaagtgacgggagtgttggagcag
ctggcgcaatga
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