Microlunatus sp. Gsoil 973: GJV80_05825
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Entry
GJV80_05825 CDS
T06297
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
micg
Microlunatus sp. Gsoil 973
Pathway
micg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
micg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GJV80_05825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
micg03400
]
GJV80_05825
Enzymes [BR:
micg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GJV80_05825
DNA repair and recombination proteins [BR:
micg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GJV80_05825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QGN32394
UniProt:
A0A6I5VIV5
LinkDB
All DBs
Position
complement(1240563..1243091)
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AA seq
842 aa
AA seq
DB search
MAQAEQTQTVTVDGRLLKISNLDKILYPQTGTTKGEVIAYYTAIARYMVPHLSGRPVTRK
RWVHGVGTDAEPGPVFFQKNLPPSGVPDWVLRRRIEHRGGTNSYPVVEDTATLVWLAQLA
SLEIHVPQWRFDDDGNPLNPDRLVLDLDPGPGVGLPECSEVAHWARDLLDAIGLELFPVT
SGSKGLHLYAHLDGNYSSADASKIAKEVAETLQKQHPDLVVAEMAKAQRTGKVFIDWSQN
NGNKTTISPYSLRGRTRPMVAVPRSWDELDEDLEHLDFHEALRRVEEFGDLLQPLAPGGP
AQPSAPDRLTKYRSMRDPDRTPEPVPATPPVPRTDGEPTFVIQEHHARRLHYDFRLEHDG
VLVSWAVPKGVPIDTRTNHLAVQTEDHPIEYGSFQGIIPHAEYGGGEVIIFDTGTYTVEK
WRDGREVIAILKGTKPGGVGTDCKVALIHTGGRGGQPENHWLMHLMSGNPSEPRPATDEQ
LKALHEQAEHSESMVWHSNRGDGNEEDGDETGTERTEPEFPPEIKPMLASSSDNPTFSRP
DEWAFEMKWDGVRAICYLAGGRARILSRRGLDVTGTYPEIADALARLDVGNAVLDGEIVA
LDEQGRPSFSRLQNRINLSGPADVSRARRETPVQLVIFDIMYLNGRSLVKQTYDDRRAEL
EKLITGGRIQLPPSFDGDQEAAQIASTSLGMEGMVAKRRSSTYQPGGRGQTWVKIKNFHT
QEVVVGGWRPGNGRRSGTVGSLLIGVPIAGDHKGRLRYIGRVGSGFSDAELGRITKLIAG
MGRDDSPLEDVPRLDARDAHWIDPDLVGEVSYAEWTGDGRLRFPVWRGWRPDKSPEEVVV
EE
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcccaggcagagcagacccagacggtcaccgtcgacggtcggctgctcaagatcagc
aatctggacaagatcctctatccgcagaccgggaccaccaagggcgaggtgatcgcgtac
tacaccgcgatcgcgcgctacatggtcccgcacttgtccgggcgtccggtgacccgcaaa
cggtgggtgcacggggtcggcaccgacgccgagccgggaccggtgttcttccagaagaac
ctgccgcccagcggggtcccggactgggtactgcggcggcggatcgaacatcgcggcggc
accaacagctacccggtcgtcgaggacaccgcgacgctggtctggctggcgcaactggca
tcgttggagatccacgtcccgcagtggcgattcgacgacgacggcaatccgctcaatccc
gaccggctggtcctcgatcttgatccgggacccggggtcggcctgccggagtgctcggag
gtggcccactgggcacgagacctgctggacgcgatcggcctggagctctttccggtgacc
agtggcagcaagggcctgcacctgtacgcccatctggacggcaactacagctcggccgac
gcctccaagatcgccaaggaggtcgccgagacgctgcagaagcagcatcccgatcttgtc
gtcgctgagatggccaaggcccagcgcaccggcaaggtgttcatcgactggagtcagaac
aacggcaacaagacgaccatctcgccgtactcgctgcgcggacgcacccggccgatggtg
gccgtaccacgcagctgggacgaactcgatgaggatctggagcacctcgacttccacgag
gcattacgcagggtcgaggagttcggcgaccttctccagccccttgcaccgggcggtcct
gcccaaccgtccgcgccggaccggttgaccaagtaccggagcatgcgcgacccggacagg
acgcccgagccggtgcccgccaccccaccggttccccggaccgacggtgaaccgaccttc
gtgatccaggaacaccacgcccggcgattgcactatgacttccgtctggaacacgacggt
gtgctggtcagctgggccgtgcccaagggtgtgccgatcgacacccgcaccaatcacctg
gcggtccagaccgaagatcatccgatcgagtacggctccttccaggggatcatcccgcac
gccgagtacggcggtggtgaggtgatcatcttcgacaccgggacgtacacggtcgagaag
tggcgggacggtcgggaggtgatcgcgatcttgaagggcaccaagcccggcggcgtcggc
accgactgcaaggtcgcgctgatccacaccggcggacgcggcgggcagccggagaaccat
tggctgatgcacctgatgtcgggcaacccgtccgaaccccggccggcgaccgatgagcag
ctgaaggcgctgcatgaacaggccgagcattccgaatccatggtctggcactccaaccgc
ggcgacgggaacgaagaggacggcgacgaaaccggcaccgagcgaaccgagccggagttc
ccgcccgagatcaagcccatgctggccagctcgtcggacaatcccaccttctccagaccc
gacgagtgggcattcgagatgaagtgggacggcgtccgggcgatctgctatctggcgggc
ggccgcgcgaggattctcagccggcgcggcctcgacgtcaccggaacctatccggagatc
gccgacgccctcgcgcggctcgacgtcgggaatgccgtgctggacggtgagatcgtcgcg
ctggacgagcagggccggccgagcttctcccgcttgcagaaccggatcaacctgagcggg
ccggcagatgtcagccgggcccgcagggaaacgcccgtccaactggtcatcttcgacatc
atgtatctcaacggccggtcgctggtgaaacagacctacgacgatcgacgtgccgaactg
gagaagttgatcaccggaggcaggattcagctgccgccgagtttcgacggtgatcaggag
gccgcccagatcgccagcaccagcctgggtatggagggaatggtcgccaagcgccgcagc
tccacctaccaacccggcggacgtggccagacctgggtcaagatcaagaacttccacacc
caggaggtcgtcgtcggcggctggcggcccggcaacggcaggcgttccggaaccgtcggg
tcactgctgatcggagtcccgatcgcgggtgatcacaagggtcggctgcgctacatcggc
cgcgtcggcagcggattctccgacgccgaactcggtcggatcaccaagctcatcgccggc
atgggacgggacgactcgcccctggaggacgtaccgcggctggatgcccgggacgcccac
tggatcgacccggacctggtcggggaggtcagctatgccgagtggaccggtgacggtcgg
ttgcgctttccggtctggcgtggctggcgaccggacaagagtcccgaagaagtcgtcgtc
gaggaatga
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