Micromonospora sp. HM134: FJK98_10215
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Entry
FJK98_10215 CDS
T06145
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
mich
Micromonospora sp. HM134
Brite
KEGG Orthology (KO) [BR:
mich00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mich03019
]
FJK98_10215 (hrpB)
Enzymes [BR:
mich01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FJK98_10215 (hrpB)
Messenger RNA biogenesis [BR:
mich03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FJK98_10215 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
AAA_22
RoxA-like_Cyt-c
ParA
AAA_19
AAA
Motif
Other DBs
NCBI-ProteinID:
QDY07499
UniProt:
A0A518WE18
LinkDB
All DBs
Position
complement(2292434..2294950)
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AA seq
838 aa
AA seq
DB search
MLRDVPLDLPVRPALASLLRALTDAGGAVLVAPPGTGKTTLAPLAVADGVAGRVLVAQPR
RVAARAAARRIADLLGERVGQRVGYAVRGDRRVGPDTRVEVVTTGLLVRRLLRDPDLPGV
DAVLLDEVHERQLDADLALAFTVEARAALRPELWLVAMSATPEADRFAALLGGDTPAPVV
RAEAALHPVTRVWTPPPRPVAPPGAGRVDPLLLDHVAATVRRALHEQDGDVLVFLPGAGE
IGAVTRRLADLTDRVAVLPLHGRLPAAAQDAALRPADRRRVVLATSVAESSLTVPGVRVV
VDAGLARVARTDLARGLGALVTVPVSRAAATQRAGRAGRQAPGVVYRCWSEGTHGRLAAQ
PEPEIATADLTGFALDLAAWGSPDGDGLALPDPPPPAALTVARETLTALGAIDADGRVTA
RGRAIAATGTHPRLGRALLDGATRVGRDRAAELVALLAEDGLAGRHDDLTAAWRRLRDDS
DPGATARWRAEVRRLRAALPGTTGQGGAGARLPDDLAAGLLVGLAHPERLARLRRAGGTP
YLMAGGTGAELAAGSALTGTGWLAVAVADRSPGAPTARVRLAAPLDEATAREVGGALLTE
DREVGWVDGDVLARQVTRLGAIELVSRPLARPTPELLAAALADGLRQAGLDLLTWTPAAR
SLRQRLAFCRQALGGPWPEVSDDALLAAADRWLGPELAAARRRADLARIDVTGALRRLLP
WPQAGRLDELAPERIEVPSGSRVRVDYADPAAPVLAVKLQETFGWQQAPRLADGRVPVLL
HLLSPAGRPVAVTADLASFWRTGYPQVRGELRGRYPRHPWPEDPVTAAPTRHTTHRRR
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
gtgctccgtgacgtacccctcgacctgccggtgcgaccggcgctggcatccctgctgcga
gcgctgaccgacgccggcggcgcggtcctggtcgccccgcccggcaccggcaagaccacc
ctggccccgctcgccgtggccgacggggtggccgggcgggtgctggtcgcccagccccgc
cgggtggccgcccgggcggcggcccggcggatcgccgacctgctcggtgagcgggtcggc
cagcgggtcggctacgccgtgcgcggcgaccgccgggtcggaccggacacccgggtcgag
gtggtcaccaccggcctgctggtccgccggctgctgcgcgacccggacctgcccggggtc
gacgcggtgctgctcgacgaggtgcacgagcggcagctcgacgccgacctcgcgctggcc
ttcaccgtggaggcccgggcggcgctgcggcccgagctgtggctggtggcgatgtcggcg
accccggaggcggaccggttcgccgccctgctcggcggcgacacgccggccccggtggtc
cgcgccgaggcggccctgcacccggtcacccgggtctggacgccaccaccgcgcccggtc
gcgccaccgggcgcgggacgggtcgatccgctgctgctcgaccacgtcgccgcgaccgtc
cggcgggccctgcacgagcaggacggcgacgtgctggtcttcctgcccggggcgggcgag
atcggggcggtgacccgccggctggccgacctgaccgaccgggtggccgtcctgccgctg
cacgggcggctgcccgccgccgcgcaggacgccgcgctgcgccccgccgaccggcgtcgg
gtggtgctcgccacctcggtcgcggagagcagcctgaccgtgcccggggtccgggtggtg
gtcgacgccggcctggcccgggtggcccgcaccgacctggcccgggggctgggcgcgctg
gtcaccgtgccggtgtcccgggccgccgcgacgcagcgggccggccgggccggccggcag
gccccgggggtggtctaccgctgctggtcggaggggacccacggccggctcgccgcgcag
cccgagccggagatcgccaccgccgacctgaccggtttcgcgctggacctggccgcctgg
ggcagcccggacggcgacgggctggcgctgcccgacccgccgccgcccgccgcgctgacc
gtggcccgggagacgttgaccgctctcggcgcgatcgacgccgacggccgggtgaccgcc
cgggggcgggccatcgccgccaccggcacccacccccggctgggccgggccctgctcgac
ggcgccacccgggtcggccgggaccgggccgccgagctggtcgccctgctcgccgaagac
ggcctggccgggcggcacgacgacctcaccgccgcgtggcggcggctgcgcgacgacagc
gaccccggtgccaccgcccgctggcgcgccgaggtccggcggctgcgtgccgcgctgccc
ggcaccaccgggcagggcggcgccggcgcacggctgcccgacgacctggcggccgggctg
ctggtggggctggcccacccggagcggctggcccggctgcgccgggccggtgggacgccg
tacctgatggcgggtgggaccggggcggagctggcggccgggtcggcgctgaccgggacg
ggctggctggccgtcgcggtcgccgaccgctcgccgggcgcaccgaccgcccgggtccgg
ctggccgccccgctcgacgaggcgaccgcccgggaggtcggcggcgcgttgctgaccgag
gaccgcgaggtcggctgggtcgacggtgacgtgctggcccgccaggtgacccggctcggc
gcgatcgagctggtcagtcgcccgctcgcccggccgacgccggagctgctggccgccgcc
ctggccgacgggctccgccaggcgggcctggacctgctgacctggaccccggcggcccgg
tcgctgcggcagcggctggcgttctgccggcaggcgctgggcgggccgtggccggaggtc
tccgacgacgcgctgctcgccgccgccgaccggtggctcgggccggagctggccgccgca
cggcgccgggccgacctggcccggatcgacgtgaccggggcgctgcgccggctgctgccc
tggccgcaggcgggccggctggacgagctggccccggaacgcatcgaggtgcccagcggc
tcccgggtccgggtggactacgccgacccggccgcgccggtgctggcggtgaagctccag
gagacgttcggctggcagcaggcgccccggctggccgacggccgggtgccggtgctgctg
cacctgctctcccccgccggccggcccgtcgcggtcaccgccgacctggcgtcgttctgg
cgtaccggctacccgcaggtgcgcggggagctgcgggggcgttacccgcgccacccctgg
ccggaggacccggtcacggccgcgccgacccggcacaccacgcaccgccgccgctga
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