Micrococcus sp. KBS0714: B1A86_00002645
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Entry
B1A86_00002645 CDS
T06141
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mick
Micrococcus sp. KBS0714
Pathway
mick03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mick00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B1A86_00002645 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mick03400
]
B1A86_00002645 (mfd)
Enzymes [BR:
mick01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1A86_00002645 (mfd)
DNA repair and recombination proteins [BR:
mick03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B1A86_00002645 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
DUF6325
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDW16862
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All DBs
Position
582514..586170
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AA seq
1218 aa
AA seq
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MSAPETTPVLAPLLPRLRAERALEAAAASASRPLEARGVELEIGLPDGARAPLLTVLAEA
LAEGHGERAAVLVVTATTREAEDLVTDLAAWAPAGAAALFPSWETLPHERLSPRSDTVGA
RLAVLRRLAHPEEHAEGPLRIVVAPVRAVLQPLVAGLGELSPVTLRTGEERDFDGVVAAL
ADAAYSRVDMVSRRGEFAVRGGLIDVFPPTEDYPVRIEFFGDEVEQMRWFSVADQRSLED
TTEDGSGHPSELYAPPCRELLITDHVRRRAKELIPAMPAAADMLDRIAEGVAVEGMESLS
PLLAEAMTSLPRMLPTGSLTVLVEPERLRGRADDLLATNEEFLQAAWAGAAQGAVAPVDV
AEADQSAAGGFLTVAELRAAALEQDQGFWSVTALVSDAELLPDAATLRATLGVPQTFSGD
IEAMVAHTRVRLAEGWHAVVLTDGPGSARRLAELNAEAGLTASVVDGPLPADLAPGRVSI
ATAPVGSGFTIPDAQIALITEHDLFGRHRTAGTRAPGARLARKRRNAVDPLTLQPGGHVV
HSQHGIARFVELQRRKVTGGPRTAPGAEESYREYLVLEYAPSKRGAPGDRLFVPTDQLDL
ISTYVGGETPSLSKMGGSDWAQTKSKAKRATREIAGELIRLYSARMASRGHAFAPDTPWQ
GELEEAFPFIETPDQLTTIEDVKKDMEAAVPMDRLVSGDVGFGKTEVAVRAAFKAVQDGK
QVAVLVPTTLLARQHHQTFSDRFAGFPVKVAALSRFQTAKESKEVIEGLAHGEVDVVIGT
HRLLSDQVQFKDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGI
RETSTLATAPEERHPVLTSVGPYSDQQVTAAIRRELMREGQVFYVHNRVTTIDKVAKRIA
ELVPEARIAVAHGKMSEARLEQIMVDFWERKFDVLVSTTIIETGLDIANANTLIVEDAHR
YGLSQLHQLRGRVGRGRERAYAYFLYDPQKPLGEVALERLKAVATHNELGAGMQLAMKDL
EIRGAGNLLGGEQSGHIAGVGFDLYLRMVGEAVADFKGEEDTAPAEVKVELPVNAHLPHD
YVPGERLRLEMYRNLAQAADDAAVDAVVEELKDRYGPLPEPVEALVAVARFRNRARAAGV
TEVMLLGQNVKFGPAADLPESRQMRLTRMYKGAQVKPALNGVLIPRPKTKPVMGQDLVDV
PLLEWAQQVVDAIFAPEG
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcccccgagaccacccccgtcctcgccccgctgctgccgcgcctgcgcgccgaa
cgcgcgctcgaggcagccgccgcctccgcctcccggccgctcgaggcccggggcgtcgaa
ctggagatcggcctgcccgacggcgcccgcgcgcccctgctgaccgtcctcgccgaggcg
ctggccgagggccacggcgagcgcgccgccgtcctcgtggtcaccgcgaccacccgcgag
gccgaggacctcgtgaccgacctggccgcctgggcacccgccggtgccgccgcgctgttc
ccgtcctgggagacgctgccccacgagcgcctgtccccgcgctcggacaccgtgggcgcg
cgcctggccgtgctgcgccgcctcgcccaccccgaggagcacgcggagggcccgctgcgc
atcgtcgtcgcccccgtgcgcgccgtgctgcagcccctcgtggccgggctcggcgagctg
agcccggtgaccctgcggacgggggaggagcgggacttcgacggtgtggtggccgcgctc
gcggacgccgcctactcccgcgtggacatggtcagccgtcgcggcgagttcgcggtgcgc
ggcgggctgatcgacgtgttcccgcccaccgaggactaccccgtgcgcatcgagttcttc
ggcgacgaggtggagcagatgcgctggttctccgtggcggaccagcgctccctcgaggac
accacggaggacggctcgggccacccctccgagctgtacgcgcccccgtgccgcgagctg
ctgatcacggaccacgtgcgccggcgcgcgaaggagctgatcccggccatgcccgccgcc
gcggacatgctggaccggatcgcggagggcgtcgctgtggagggcatggagtccctctct
ccgctgctggccgaggccatgacgtcgctgccgcgcatgctgcccaccgggtcgctgacc
gtcctcgtggagcccgagcgcctgcgcggccgcgccgacgacctgctggccaccaacgag
gagttcctccaggccgcgtgggccggcgccgcgcagggagcggtcgccccggtggacgtg
gccgaggcggaccagtccgccgccggcggcttcctcacggtggccgagctccgcgcggcc
gcgctcgagcaggaccaggggttctggtccgtcaccgcgctggtctcggacgctgagctg
ctgcccgacgccgccaccctgcgcgccaccctcggcgtcccgcagaccttctcgggcgac
atcgaggccatggtcgcgcacacccgcgtccggctcgcggaggggtggcatgccgtggtc
ctcaccgacggccccggctccgcccgccgtctcgccgagctcaacgcggaggccggtctc
acggcctccgtggtggacgggcccctgcccgcggacctcgccccggggcgggtctccatc
gcgacggcgcccgtcggctccggcttcacgatcccggacgcgcagatcgccctgatcacg
gagcacgacctcttcggccggcaccgcaccgcgggcacgcgcgcccccggggcgcggctg
gcccggaagcggcgcaacgccgtcgacccgctgaccctgcagcccggcggccacgtggtg
cactcccagcacggcatcgcccgcttcgtggagctgcagcgccgcaaggtcaccggcggc
ccgcgcaccgcccccggcgccgaggagtcctaccgcgagtacctcgtgctggagtacgcg
ccctcgaagcgcggcgcccccggcgaccggctcttcgtgcccaccgaccagctcgacctg
atctccacctacgtgggcggggagacgccgtcgctgtccaagatgggcggctcggactgg
gcgcagaccaagtccaaggccaagcgcgccacccgcgagatcgccggcgagctcatccgc
ctgtactcggcccgcatggcctcgcgcggccacgcgttcgccccggacaccccgtggcag
ggcgagctggaggaggccttcccgttcatcgagacgccggaccagctgaccaccatcgag
gacgtcaagaaggacatggaggcggccgttcccatggaccggctcgtctccggcgacgtc
ggcttcggcaagaccgaggtggccgtgcgcgccgcgttcaaggcggtgcaggacggcaag
caggtggccgtcctcgtcccgacgacgctgctcgcccgccagcaccaccagacgttctcc
gaccggttcgccggcttccccgtgaaggtggccgcgctctcccggttccagaccgccaag
gagtccaaggaggtcatcgaggggctcgcgcacggcgaggtggacgtggtgatcggcacc
caccggctgctctccgaccaggtgcagttcaaggacctgggcctggtgatcgtggacgag
gagcagcgcttcggcgtcgagcacaaggaggcgctgaagaagatgcgcaccaacgtggac
gtgctcgccatgtccgccacgcccatcccgcgcaccctcgagatgtccctcaccggcatc
cgcgagacctccacgctggccaccgccccggaggaacgccaccccgtgctcacctcggtg
ggcccgtactcggaccagcaggtcaccgcggccatccgccgcgagctaatgcgtgagggc
caggtgttctacgtgcacaaccgcgtcaccaccatcgacaaggtggccaagcgcatcgcc
gagctggtgccggaggcccggatcgccgtcgcccacggcaagatgagcgaggcccggctc
gagcagatcatggtggacttctgggagcggaagttcgacgtgctcgtctccaccacgatc
atcgagaccggcctggacatcgccaacgccaacaccctgatcgtggaggacgcccaccgc
tacggcctctcgcagctgcaccagctgcgcggccgggtgggccgtggccgcgagcgggcg
tacgcgtacttcctgtacgacccgcagaagcccctcggcgaggtggccctcgaacggctc
aaggccgtggccacccacaacgagctcggcgcgggcatgcagctggccatgaaggacctc
gagatccgcggcgccggcaacctgctgggcggggagcagtccggccacatcgccggcgtg
ggcttcgacctctacctgcggatggtgggcgaggccgtggccgacttcaagggcgaggag
gacaccgcgcccgccgaggtgaaggtggagctgccggtcaacgcccacctgccgcacgac
tacgtgccgggggagcggctgcgcctcgagatgtaccgcaacctcgcccaggccgcggac
gacgccgccgtggacgccgtggtggaggagctcaaggaccgctacggcccgctgccggag
ccggtggaggcgctcgtcgccgtcgcccggttccgcaaccgggcgcgggccgcgggcgtc
accgaggtcatgctgctgggccagaacgtgaagttcggccccgccgcggacctgccggag
tcccgtcagatgcgcctgacccgcatgtacaagggcgcccaggtcaagccggccctgaac
ggcgtcctcatcccgcggcccaagaccaagccggtcatgggtcaggatctcgtggatgtc
ccgctgctcgagtgggcgcagcaggtggtcgacgcgatcttcgcgccggagggctga
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