Microvirga thermotolerans: GDR74_07785
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Entry
GDR74_07785 CDS
T06255
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mico
Microvirga thermotolerans
Brite
KEGG Orthology (KO) [BR:
mico00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GDR74_07785 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mico03400
]
GDR74_07785 (ligD)
Enzymes [BR:
mico01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GDR74_07785 (ligD)
DNA repair and recombination proteins [BR:
mico03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GDR74_07785 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QFU16129
UniProt:
A0A5P9JVC3
LinkDB
All DBs
Position
complement(1663531..1666071)
Genome browser
AA seq
846 aa
AA seq
DB search
MAKLATYRAKRDFTKTSEPKGATSRRSGSSFVVQKHDASRLHYDFRLEMDGVLKSWAVAK
GPSLVPGEKRLAVEVEDHPVDYGDFEGTIPEGQYGGGTVMLWDRGTWTPEGDPHEDYATG
RLSFRLDGEKLRGTWHLIRMRHPREKRSSWLLIKGDDEHARGPDDPDILEEAPLSVKTGR
SLDEIAGRKAAKKRAAKKKAQAAPSKAQARAKPSPQAGPMPDKVEPCLATLVEEVPTGPG
WIHEVKWDGYRLLAFVADGRVRLVTRNGKDWTKRFPGIAGALSALPVESAILDGEAVMLD
ENGVSSFAALQQALSSETKGVASDAVFYAFDLLYRDGDDLRPLPLGERKARLAKLLAKSR
KAGPVRYSEHRTQGGSMIRTVCRKGLEGVVSKRVDLPYRGGRNEDWVKTKCTDEQEFVIA
GYVPSTAYENAIGSLVLGYYDKDRLAYAGRTGTGFTRDLARDLFRRLRPLRTDRPPFSGR
LGAQQRRGVVWVRPELIGQVEFRGWTADGIVRHAAFKGLREDKDAKDVTREKRHALSASE
SGGAKTMSANGTAIAGIALTHPDRILWEDQGLTKQELAGFYVDIAEWLLPHLVDRPLTLI
RCPSGAKKSCFVQRHSWAGLSDAVHRETVRDEGGEMDVLTVGDIRGVVALVQAGVLEMHV
WGATLADLDRPDRLIFDLDPGEGVPWTRVVEGARAIRERLKAAGLESFVKTTGGKGVHVV
APLTPGAPWDEALRFSRGLAQAMAADEPDRYTTTSVKRERAGRIFIDYLRNNREASAVAP
YSTRARPGAPVSTPVSWEELADVAPNGFTVRNLRKRLASLKQDPWADIGRLDQVLPAGGK
ASKRRA
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagctcgcgacctatcgcgccaagcgcgacttcaccaagacttccgagccgaag
ggagcaacctcccgccggagcgggtcctccttcgtcgtccagaagcacgacgcctcccgc
ctccattacgacttccgcctcgaaatggacggggtcctcaagagctgggccgtcgcgaag
ggccccagcctcgttcccggcgagaagcgcctcgcggtggaggtcgaggaccatcccgtc
gactacggcgatttcgaaggcacgatcccggagggccagtatggcggcgggaccgtgatg
ctctgggaccggggcacgtggacgcccgagggcgatccccatgaagactatgccacgggg
cgcctgagcttccgcctcgacggcgagaagctgcgcggcacatggcacctgatccgcatg
cgccacccgcgcgagaagcggtcctcctggctgctcatcaagggcgacgacgagcacgcg
cgcggccccgacgacccggacatcctggaggaggcgcccctctccgtcaaaaccggccgc
tccctcgacgagatcgcaggacggaaggcggcgaagaaacgtgcggccaagaagaaggcc
caagccgcgccttccaaggcgcaggcccgcgcgaagccctccccgcaggcgggcccgatg
ccggacaaggtcgaaccctgcctcgccaccctggtggaggaggtccccaccggcccgggc
tggatccacgaggtgaagtgggacggataccgtctcctcgccttcgtcgcggacggcagg
gtccgcctcgtcacccgcaatggcaaggactggacgaagcgctttcctgggattgccggc
gcgctctccgccctgccggtggagtcagcgatcctcgacggcgaagcggtgatgctcgac
gagaacggcgtttcgagtttcgcggccctgcagcaggccctgtcgagcgagacgaagggc
gtcgcgtcggatgcggtcttctacgccttcgacctgctctaccgggacggagatgacctg
cgccccctcccgctcggcgagcgcaaggcgaggctcgccaagctcctcgcgaaatcccgc
aaggccggcccggtgcgctacagcgagcaccgcacgcagggcgggtccatgatccggacc
gtgtgccggaagggcctcgagggcgtggtctcgaagcgggtcgacctaccctaccgcggc
gggcggaacgaggactgggtcaagaccaagtgcacggacgagcaggaattcgtcatcgcg
ggctatgtgccttcgacggcctacgagaacgccatcggctccctcgtcctgggctattac
gacaaggaccggctggcctatgcgggccggacgggcaccggcttcaccagggacctggcg
cgggatctgttcaggcgcctccgtccgctgaggaccgacaggccgccgttctcgggcagg
ctcggcgcgcagcagcggcgcggggtcgtgtgggtgcgtcccgagttgatcggacaggtg
gagttccgcggctggaccgccgacgggatcgtgcggcacgccgcattcaagggactgcgc
gaagacaaggacgcgaaggacgtgacgcgtgagaagcggcacgccctgtccgcatccgag
agcggcggagccaagaccatgagcgccaacgggaccgccatcgccggcatcgccctcacc
catcccgaccgcatcctgtgggaggaccagggcctcaccaagcaggaactcgccggattc
tacgtggacatcgccgagtggctcctgccgcatctggtcgaccggcccctgaccctgatc
cgctgtccctccggcgcgaagaagagctgcttcgtgcagcgccattcctgggccgggctc
tcggatgccgtccatcgcgagacggtgcgcgacgaggggggagagatggatgtgctcacg
gtcggcgacattcgcggcgtggtcgccctcgtgcaggccggcgtcctggagatgcacgtc
tggggcgcgaccctcgccgacctcgaccgtcccgaccggctgatcttcgatctcgacccc
ggtgagggtgtcccctggacccgcgtcgtcgaaggagcgcgtgcgatccgcgagcggctg
aaggccgcgggcctcgaaagcttcgtcaagacgaccggcggcaagggagtccacgtggtc
gctcccctgacgccgggggccccatgggacgaagcgctgcggttctcccgcggcctggcg
caggccatggccgcggacgagccggaccgctacacgaccacctccgtgaagcgggagcgc
gccggcaggatcttcatcgattatctgcgcaacaatcgcgaggcgtctgccgttgcgccc
tactcgacacgggcgcggcccggcgcgcccgtgtcgacgccggtctcctgggaggagctt
gccgacgtcgccccgaacggtttcaccgtccgcaacctgagaaagcggctcgcttccctg
aagcaggatccatgggcggacatcggcaggctcgatcaggtcctgcctgcaggcggcaag
gcctcaaagcgccgggcgtga
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