KEGG   Microvirga thermotolerans: GDR74_07785
Entry
GDR74_07785       CDS       T06255                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mico  Microvirga thermotolerans
Brite
KEGG Orthology (KO) [BR:mico00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GDR74_07785 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mico03400]
    GDR74_07785 (ligD)
Enzymes [BR:mico01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GDR74_07785 (ligD)
DNA repair and recombination proteins [BR:mico03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GDR74_07785 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QFU16129
UniProt: A0A5P9JVC3
LinkDB
Position
complement(1663531..1666071)
AA seq 846 aa
MAKLATYRAKRDFTKTSEPKGATSRRSGSSFVVQKHDASRLHYDFRLEMDGVLKSWAVAK
GPSLVPGEKRLAVEVEDHPVDYGDFEGTIPEGQYGGGTVMLWDRGTWTPEGDPHEDYATG
RLSFRLDGEKLRGTWHLIRMRHPREKRSSWLLIKGDDEHARGPDDPDILEEAPLSVKTGR
SLDEIAGRKAAKKRAAKKKAQAAPSKAQARAKPSPQAGPMPDKVEPCLATLVEEVPTGPG
WIHEVKWDGYRLLAFVADGRVRLVTRNGKDWTKRFPGIAGALSALPVESAILDGEAVMLD
ENGVSSFAALQQALSSETKGVASDAVFYAFDLLYRDGDDLRPLPLGERKARLAKLLAKSR
KAGPVRYSEHRTQGGSMIRTVCRKGLEGVVSKRVDLPYRGGRNEDWVKTKCTDEQEFVIA
GYVPSTAYENAIGSLVLGYYDKDRLAYAGRTGTGFTRDLARDLFRRLRPLRTDRPPFSGR
LGAQQRRGVVWVRPELIGQVEFRGWTADGIVRHAAFKGLREDKDAKDVTREKRHALSASE
SGGAKTMSANGTAIAGIALTHPDRILWEDQGLTKQELAGFYVDIAEWLLPHLVDRPLTLI
RCPSGAKKSCFVQRHSWAGLSDAVHRETVRDEGGEMDVLTVGDIRGVVALVQAGVLEMHV
WGATLADLDRPDRLIFDLDPGEGVPWTRVVEGARAIRERLKAAGLESFVKTTGGKGVHVV
APLTPGAPWDEALRFSRGLAQAMAADEPDRYTTTSVKRERAGRIFIDYLRNNREASAVAP
YSTRARPGAPVSTPVSWEELADVAPNGFTVRNLRKRLASLKQDPWADIGRLDQVLPAGGK
ASKRRA
NT seq 2541 nt   +upstreamnt  +downstreamnt
atggcaaagctcgcgacctatcgcgccaagcgcgacttcaccaagacttccgagccgaag
ggagcaacctcccgccggagcgggtcctccttcgtcgtccagaagcacgacgcctcccgc
ctccattacgacttccgcctcgaaatggacggggtcctcaagagctgggccgtcgcgaag
ggccccagcctcgttcccggcgagaagcgcctcgcggtggaggtcgaggaccatcccgtc
gactacggcgatttcgaaggcacgatcccggagggccagtatggcggcgggaccgtgatg
ctctgggaccggggcacgtggacgcccgagggcgatccccatgaagactatgccacgggg
cgcctgagcttccgcctcgacggcgagaagctgcgcggcacatggcacctgatccgcatg
cgccacccgcgcgagaagcggtcctcctggctgctcatcaagggcgacgacgagcacgcg
cgcggccccgacgacccggacatcctggaggaggcgcccctctccgtcaaaaccggccgc
tccctcgacgagatcgcaggacggaaggcggcgaagaaacgtgcggccaagaagaaggcc
caagccgcgccttccaaggcgcaggcccgcgcgaagccctccccgcaggcgggcccgatg
ccggacaaggtcgaaccctgcctcgccaccctggtggaggaggtccccaccggcccgggc
tggatccacgaggtgaagtgggacggataccgtctcctcgccttcgtcgcggacggcagg
gtccgcctcgtcacccgcaatggcaaggactggacgaagcgctttcctgggattgccggc
gcgctctccgccctgccggtggagtcagcgatcctcgacggcgaagcggtgatgctcgac
gagaacggcgtttcgagtttcgcggccctgcagcaggccctgtcgagcgagacgaagggc
gtcgcgtcggatgcggtcttctacgccttcgacctgctctaccgggacggagatgacctg
cgccccctcccgctcggcgagcgcaaggcgaggctcgccaagctcctcgcgaaatcccgc
aaggccggcccggtgcgctacagcgagcaccgcacgcagggcgggtccatgatccggacc
gtgtgccggaagggcctcgagggcgtggtctcgaagcgggtcgacctaccctaccgcggc
gggcggaacgaggactgggtcaagaccaagtgcacggacgagcaggaattcgtcatcgcg
ggctatgtgccttcgacggcctacgagaacgccatcggctccctcgtcctgggctattac
gacaaggaccggctggcctatgcgggccggacgggcaccggcttcaccagggacctggcg
cgggatctgttcaggcgcctccgtccgctgaggaccgacaggccgccgttctcgggcagg
ctcggcgcgcagcagcggcgcggggtcgtgtgggtgcgtcccgagttgatcggacaggtg
gagttccgcggctggaccgccgacgggatcgtgcggcacgccgcattcaagggactgcgc
gaagacaaggacgcgaaggacgtgacgcgtgagaagcggcacgccctgtccgcatccgag
agcggcggagccaagaccatgagcgccaacgggaccgccatcgccggcatcgccctcacc
catcccgaccgcatcctgtgggaggaccagggcctcaccaagcaggaactcgccggattc
tacgtggacatcgccgagtggctcctgccgcatctggtcgaccggcccctgaccctgatc
cgctgtccctccggcgcgaagaagagctgcttcgtgcagcgccattcctgggccgggctc
tcggatgccgtccatcgcgagacggtgcgcgacgaggggggagagatggatgtgctcacg
gtcggcgacattcgcggcgtggtcgccctcgtgcaggccggcgtcctggagatgcacgtc
tggggcgcgaccctcgccgacctcgaccgtcccgaccggctgatcttcgatctcgacccc
ggtgagggtgtcccctggacccgcgtcgtcgaaggagcgcgtgcgatccgcgagcggctg
aaggccgcgggcctcgaaagcttcgtcaagacgaccggcggcaagggagtccacgtggtc
gctcccctgacgccgggggccccatgggacgaagcgctgcggttctcccgcggcctggcg
caggccatggccgcggacgagccggaccgctacacgaccacctccgtgaagcgggagcgc
gccggcaggatcttcatcgattatctgcgcaacaatcgcgaggcgtctgccgttgcgccc
tactcgacacgggcgcggcccggcgcgcccgtgtcgacgccggtctcctgggaggagctt
gccgacgtcgccccgaacggtttcaccgtccgcaacctgagaaagcggctcgcttccctg
aagcaggatccatgggcggacatcggcaggctcgatcaggtcctgcctgcaggcggcaag
gcctcaaagcgccgggcgtga

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