Microbacterium sp. 1.5R: BMW26_11320
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Entry
BMW26_11320 CDS
T04912
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
micr
Microbacterium sp. 1.5R
Pathway
micr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
micr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BMW26_11320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
micr03400
]
BMW26_11320
Enzymes [BR:
micr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BMW26_11320
DNA repair and recombination proteins [BR:
micr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BMW26_11320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
APH45476
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Position
2364341..2366317
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AA seq
658 aa
AA seq
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MVAEAQNVQIDGRRLRITNLDKVVYPETGTTKGEIIAYYTAIAPHLLPLLAGRPVTRKRW
VEGVGTADAPADAFFTKQLEPGAPEWIPRQPIRHSDGPKEYPLVQDVPTLVWLAQVAAIE
LHVPQWRFASDGMPGKPDRLVLDLDPGPGVGLAQCAEVARIARSLLSDIGLDPVPVTSGS
KGIHLYAALPGQQTSAEISAVVKEIARLIETEHPDLATSTMAKAARGGKVFLDWSQNNGK
KTTISPYSMRGRAHPWVAAPRTWDELDDPDLAQLDFATVLERAGSGQDPIAPLLAAQEGP
PDTTSAPGPRVDAHGANSHASRHRPRTTGAAPLASSSPPSVSPMLAENGTPAIARTLSSP
SWVEVKWDGIRAIGTWADGRMLLHARSGTDITARYPELTADGAPFLPVSDAIIDGEIVAF
DAQGRPSFSMLQNRMHLTRPREIEREVVRTPIVYMAFDLLRLNGHDLSTMALSERRTLLE
EVVADLDAPVQVPPVFDDLDAALAASDEFGLEGVVVKDPSSRYRPGQRSPAWLKIKHTRM
QEVVIVGIRPGKGDREGTFGSLLLAVPESGRLRYVGRVGTGFTDRMLRDLLSRLAPLRTD
SAPLEDVPALDASDALWVRPELVGEVEFANWTPDGVLRHSRWRGLRPDKTPDEVIVES
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggtcgcagaggcgcagaacgtgcagatcgatggccgccggctgcgcatcaccaacctc
gacaaggtcgtctaccccgagaccggcaccacgaagggcgagatcatcgcctactacacg
gcgatcgcgccgcacctcctccctctgctcgcgggccgccccgtgacccgcaagcgctgg
gtggaaggggtggggaccgcggatgctcccgccgacgcgttcttcacgaagcagctcgag
ccgggagctccggaatggatcccccgacagccgatccggcactcggacggccccaaggag
tatcccctcgtccaggacgttcccacgctggtctggctcgcgcaggtcgccgcgatcgag
ctgcacgtgccgcagtggcgcttcgcctccgacggcatgccgggaaagccggatcggctc
gtcctggatctcgacccgggcccgggggtcgggctcgcccagtgcgccgaggtcgcacgg
atcgcacgcagcctgctcagcgacatcggactcgatccggtgcccgtgaccagcggaagc
aaagggatccacctctacgccgccctccccgggcagcagacgagcgcagagatatccgcg
gtcgtgaaggagatcgcccgtctgatcgagaccgagcatccggatctcgccacgagcacg
atggccaaggccgcgcgcggcggcaaggtctttctcgactggagccagaacaacggcaag
aagacgacgatctcgccgtactcgatgcgtggtcgcgcgcacccctgggtggcggctccg
cgcacctgggacgaactcgacgaccccgacctcgcgcagctcgacttcgcgacggtgctc
gagcgtgcgggttccgggcaggaccccatcgctccgcttctcgccgcccaggagggcccc
ccggacaccacctctgcgccgggcccccgcgtcgacgcacacggcgcgaactcgcatgcg
agccgccaccgcccgcggacgaccggtgcggcaccactggcctcgtcgtctcccccctcc
gtctcccccatgctggccgagaacggcacgccggcgatcgcccgcactctgagctctccg
tcgtgggtggaggtgaagtgggacggcatcagggccatcggaacctgggcggacggacgg
atgctgctgcatgcccgcagcggcaccgacatcacggcccgctaccccgagctgactgcc
gacggcgcgccgttcctgcccgtgtccgatgcgatcatcgatggcgagatcgtcgccttc
gatgcgcagggcaggccgagcttctcgatgctgcagaaccgcatgcacctgacccggccc
cgcgagatcgaacgcgaggtcgtgcgcacgcccatcgtctacatggctttcgatctgctc
cgactgaacggtcacgacctcagcaccatggcgctgtcggagcgacggaccctcctcgag
gaggtcgtcgccgacctcgatgcgccggtgcaggtcccgcccgtgttcgacgatctcgac
gccgctctcgcggcgagcgacgagttcggcctcgagggcgtcgtcgtcaaggatccgtcc
tcgcggtaccgtccgggccagcgctcaccggcctggctgaagatcaagcacacccgcatg
caggaggtcgtgatcgtcggtatccgccccggcaagggcgaccgggagggcacgttcggc
tccctgctgctcgcggtccccgagtccggacggctgcgctatgtcggtcgcgtcggcacg
ggattcaccgaccggatgctgcgcgacctgctgagccggctcgctcccctgcgcaccgac
tccgcgcccctcgaggacgtgcccgcgctcgatgcgtcggatgcgctctgggtccgacct
gagctcgtcggcgaggtcgagttcgcgaactggaccccggacggcgttctgcgtcactcc
cgttggcggggactccggccggataagactcccgacgaggtgatcgtcgagtcctga
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