Microbacterium sp. SGAir0570: C1N74_09320
Help
Entry
C1N74_09320 CDS
T07987
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mics
Microbacterium sp. SGAir0570
Pathway
mics03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mics00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1N74_09320 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mics03400
]
C1N74_09320 (mfd)
Enzymes [BR:
mics01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1N74_09320 (mfd)
DNA repair and recombination proteins [BR:
mics03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1N74_09320 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
UB2H
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QCR40594
LinkDB
All DBs
Position
complement(1952915..1956493)
Genome browser
AA seq
1192 aa
AA seq
DB search
MRALSQADSFREAVTSGAVGSLDYSLVDGLDAPLLAALLEQRRRDGRPAVVLAVAPTGRR
AETLGAALQCLVPEAEIVHFPAWETLPHERLSPSPETVGRRLAVLRRAAAHDGSTPLVIT
ASVRAALQPLAAGLTDADPVSLSVGARGSDLEQVVRRLVELAYHRVDMVSRRGEFAVRGG
ILDVFPAAADHPLRIDFFGDEVDQIRAFSIADQRSLPGEVGEAVLLPARELLLTPAVRER
AAAMAPTFPSLTGMLEKMSQGIPVEGMESLLPALAEGIVPLVDYLPRGSAIALVDPERSR
TRARTLGETNREFLEAAWSAATAGADSPVDLGAGDFLTLPALRDAMRERSGVWWTLSAFD
SGAADAAGEGLTETGDDLRVDGSAVPSFQGNVDGATAHIGDLLARGWRVVVCASGPGLVD
RARDVMAERGIAARTSDCVAELSDEAVAVCVVASLERGFESAEAKLAVLTESEFYGRTIG
SDGRVVKKLATRRRNVVDPLQLKPGDVVVHSTHGIGKFVELVQREVSSGGRNAVKTQREY
LVLEYAPAKRGYPGDKLFVPTDQLDQLSRYVGGEAPVLSKMGGSDWAAAKGKARKAVRDI
AVELVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETPDQLQTIDEIKADMEKPIPMDR
LLSGDVGFGKTEVAVRAAFKAIQEGKQVAMLVPTTLLAKQHLETFTERFAGFPVKVRPLS
RFQTAKQARETVDGLADGTVDMVIGTHRILTEKVAFKDLGLLIIDEEQRFGVEHKDSLKK
LKTGVDILAMSATPIPRTLEMAVTGIREMSTLATPPEERHPILTYVGPRSDKQIAAAIRR
ELLREGQVFFVHNRVQSIQRVAAQLGELVPEARIAVAHGQMGEHQLEQVVDDFWERRADV
LVSTTIVETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDENKPLSE
TAADRLETIAVNNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLYLRMIGEAVS
TFRGEEVDGPAELRLELPVAARIPEDYIDSERLRLEAYQKLSAAAAVSAKDDAIDLVVEE
LTDRYGRPPAEVEGLLAVARLRRRAAQAGLTDVVAMGPNLRVAPARLPESMRIRLQRLYP
KAKLLAGGEALVVPLPTAGGAALGDADLIAWTGQLLDQLFPVATTAASPAAS
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcgccctttcgcaggctgactccttccgggaggcggtgacatccggagccgtcggc
agtctcgactactcgctggtcgacgggctcgacgcccccctcctcgcggctctgctcgag
cagcgtcgccgcgacggtcgacccgctgtcgtgctcgccgtcgctcccaccggtcgccgc
gccgagaccctcggtgccgcgctgcagtgcctcgtccccgaggccgagatcgtgcacttc
cccgcctgggagaccctgccgcacgaacggctgagcccgagccccgagaccgtcggacgc
cgtctcgccgtgcttcgccgtgcggccgcgcacgacggcagcacaccgctggtcatcacg
gcctccgtccgcgcggccctgcagccgctcgcggccggtctgaccgacgccgacccggtg
tcgctgtcggtcggagcgcgggggagcgacctcgaacaggtggtccggcgcctcgtcgaa
ctcgcctatcaccgggtcgacatggtctcccgtcgcggcgagttcgcagttcgcggcggc
atcctcgatgtcttcccggccgcggccgaccacccgctgcgcatcgacttcttcggcgac
gaggtcgaccagatccgcgcgttctccatcgccgaccagcgatcactgcccggcgaggtc
ggcgaggccgtgctcctgccggcgcgtgagctgctgctgacgccggccgtccgcgagcgg
gctgcggcgatggcccccaccttcccgagtctgacgggcatgctcgagaagatgtcgcag
ggcatccccgtcgaggggatggagtcgctgctgcccgcgctcgcagagggcatcgtgccg
ctcgtcgactatctgccccgcggctcggcgatcgctctcgtcgaccccgagcgctcgcgc
acgcgggcgcgcaccctcggtgagaccaaccgcgaattcctcgaagcggcctggagcgcg
gcgaccgccggggctgacagccccgtcgatctcggcgcgggcgacttcctgaccctcccc
gctctgcgcgacgcgatgcgcgagcgatccggggtgtggtggaccctcagcgccttcgac
tcgggagcagcggatgccgccggcgaggggctgaccgagaccggcgacgacctgcgtgtc
gacggcagcgcggtgccctcgttccagggcaacgtcgacggtgccaccgcccacatcggc
gacctgctggcgcgcggctggcgcgtcgtcgtctgcgcctcgggtcccgggctcgtcgac
cgggcccgcgacgtgatggccgagcgcgggatcgccgcccgcacgagcgattgcgtcgcc
gagctctccgacgaggccgtcgcggtctgcgtcgtggcatcgctcgagcgcggtttcgag
tcggccgaggcgaagctcgccgtcctcaccgagagcgagttctacggccgcacgatcggc
agcgacggccgagtggtgaagaagctcgcgacgcggcgacgcaacgtcgtcgacccgttg
cagctgaagcccggcgatgtcgtcgtccactcgacccacggcatcggcaagttcgtcgag
ctcgttcagcgcgaggtgtcgagtggcggccgcaacgcggtgaagacgcagcgcgagtac
ctcgtgctcgagtacgcgcccgccaaacgcggctatcccggtgacaagctcttcgtgccg
accgaccagctcgaccagctctcgcggtacgtcggcggcgaggccccggtgctgtcgaag
atgggcggcagcgactgggcagccgcgaagggcaaggcgcgcaaggccgtccgtgacatc
gccgtcgagctcgtcaagctgtactcggcgcgcatggcgtcgaaggggcacgcgttcggc
cccgacaccccgtggcagcgcgagctcgaagaggcgttccccttcgcggagacgcccgac
cagctgcagacgatcgacgagatcaaggccgacatggagaagccgatcccgatggatcgc
ctgctctcgggcgacgtcggattcggcaagaccgaggtcgccgtccgcgccgcgttcaag
gcgattcaggaggggaagcaggtcgcgatgctggtcccgaccacgcttctcgcgaagcag
catctcgagacgttcaccgagcgcttcgccggattcccggtgaaggtgcgccccctgtcg
cggttccagaccgcgaagcaggcccgcgagacggtcgacgggctcgccgacggcaccgtc
gacatggtcatcggcacccaccgcatcctgaccgagaaggtcgccttcaaggatctcggg
ctcctcatcatcgacgaggagcagcggttcggcgtcgaacacaaggactcgctgaagaag
ctgaagaccggcgtcgacatcctcgcgatgagcgcgacgccgatcccgcgcacgctcgag
atggcggtgaccggtattcgggagatgtcgaccctggcgaccccgcccgaggagcggcat
cccatcctcacctacgtcggaccgcgcagtgacaagcagatcgcggccgccatccggcgc
gagctgctgcgcgagggccaggtgttcttcgtgcacaaccgggtgcagtcgatccagcgg
gtcgcggcgcagctcggtgagctggtgcccgaggcgcgcatcgccgtcgcgcacggccag
atgggggagcaccagctcgagcaggtcgtggacgacttctgggagcggcgtgccgacgtc
ctcgtctcgacgacgatcgtcgagacggggctcgacatctccaacgcgaacaccatcatc
atcgaccgtgccgacaagtacgggctgagccagctgcaccagctgcgcggccgggtcggg
cgcgggcgcgagcgcgcgtacgcgtacttcctctacgacgagaacaagcccctcagcgag
acggccgccgaccgcctcgagacgatcgccgtcaacaacgacctcggctcgggcatgcag
gtcgcgctgaaggacctcgagctgcgcggcgcgggtaatctgctgggcgccgagcaggcc
ggccacatcgccggggtcgggttcgacctctatctgcggatgatcggcgaggccgtctcg
acgttccggggcgaggaggtcgacgggccggccgagctgcggctcgagctgcccgtggcc
gcgcgcattcccgaggactacatcgacagcgagcgcctgcgcctcgaggcgtatcagaag
ctctcggcggcggcagccgtcagcgccaaggacgatgcgatcgacctcgtggtcgaagag
ctcaccgaccggtacgggcgcccgccggccgaggtggagggtctactcgcggtcgcccgg
ctgcgccgccgcgcagcccaggccgggctgacggacgtcgttgcgatgggaccgaatctt
cgggtcgcgccggcccggctgcccgagtcgatgcgcatccggctgcagaggctgtacccc
aaggccaaactgctcgccggcggcgaagccctcgtggtcccgttgccgaccgccggcggt
gccgcgctcggcgatgccgacctcatcgcgtggacgggtcagctgctcgaccagctcttc
ccggtcgccacgacggcggcgtcgcccgccgcatcctga
DBGET
integrated database retrieval system
