Microbulbifer sp. THAF38: FIU95_04440
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Entry
FIU95_04440 CDS
T06274
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mict
Microbulbifer sp. THAF38
Pathway
mict03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mict00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU95_04440 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mict03019
]
FIU95_04440 (deaD)
03009 Ribosome biogenesis [BR:
mict03009
]
FIU95_04440 (deaD)
Enzymes [BR:
mict01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIU95_04440 (deaD)
Messenger RNA biogenesis [BR:
mict03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIU95_04440 (deaD)
Ribosome biogenesis [BR:
mict03009
]
Prokaryotic type
rRNA helicases
FIU95_04440 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
AAA_19
AAA_22
Flavi_DEAD
Lip_prot_lig_C
Motif
Other DBs
NCBI-ProteinID:
QFT53823
UniProt:
A0A5P9EUF3
LinkDB
All DBs
Position
998450..1000231
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AA seq
593 aa
AA seq
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MTDTPKPAGFDQLGLPPEILTAIEKLGYETPSPIQAQTIPSLLENRDVLGQAQTGTGKTA
AFALPLLSKLDLKDRRPQALVLAPTRELAIQVAEACQAYAANLKGFHVAPIYGGADYRGQ
IQQLKRGVQLVVGTPGRVMDHMRRGSLDLSNLRTLVLDEADEMLRMGFIDDVQWVLEQIP
EERQIALFSATMPKEIARIAREHLQEPVEVKIRVKQETAETIRQRYWPVGGLHKLDALTR
ILEAEPVDATIIFVRTKNSTVELADKLAARGFASAALNGDMAQNLREQVIDKLKKGKLDI
VVATDVAARGLDVKRISHVINYDIPYDTEAYIHRIGRTGRAGREGDAILFVAPRERRMLR
VIEKATKKPIEKLDLPSAEMVNSARMQRFRERITATLEGQTDLAPYRLLVEEFLAQNEVD
PLDVAAALASMAQGDQPLLVKEQEPKPRRERERRDRDDEFEGRRRKKDSYEKDRKMPSPD
EGLERFRIEVGREHGVRPGSIVGAIANEVDLESSYIGRIEIYGDFTTVDLPEGMPKEILQ
HLKKVRVAGKPMKISRFDEDAVKPRGKPKGKPKGKPQGKPKGKPKFKRDNGGE
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgaccgataccccaaaaccggccggcttcgaccagctgggcctgccgcctgaaatcctt
actgccattgaaaaactaggctatgagaccccctctccgattcaggcacagacaatcccc
tccctgttggagaaccgcgatgtgctgggccaggcccagaccggcaccggcaaaactgcc
gccttcgcactgccattactgtccaaattggacctgaaagaccgccgcccgcaagctttg
gtactggcgccgactcgcgaattggctatccaggtggccgaggcctgccaggcctatgcc
gccaacctgaaaggcttccatgtagccccgatctacggtggtgccgactatcgtggacag
attcaacaattgaagcgtggcgtgcagctggtggtgggtacccccggccgagtgatggac
catatgcgccgcggctccctggacctctccaacctgcgcaccctggtgctggatgaagcc
gatgaaatgctgcgtatgggctttatcgacgatgttcagtgggtattggagcagattcct
gaagaacgccagattgcgctgttctccgccaccatgcctaaagagattgctcggatagct
cgagaacacctgcaggagccggttgaagttaaaatccgcgtcaagcaggagacggcagag
actatccgtcagcgctactggcctgtgggcggtttgcacaaactggatgctcttacccgt
atccttgaagcggagccggtggatgccacgattatttttgtgcgcaccaaaaacagcacc
gttgagttggccgataagttagcggcccgcggttttgccagtgccgccctgaacggcgat
atggcgcagaacctgcgtgagcaggtgattgacaagctgaagaagggcaagctcgatatc
gttgtcgccaccgatgtggcagcgcgcggcctggatgtgaagcgtatcagccatgtgatc
aactacgacattccttacgatactgaggcttatattcaccgtatcggccgtaccggtcgc
gccggtcgcgagggcgatgccatcttgtttgtggcaccgcgcgagcgtcgcatgctgcgc
gttattgagaaggccactaagaagcccattgaaaagctggatttacccagcgcagaaatg
gtcaacagtgcccgtatgcaacgcttccgcgagcgtattactgcgaccctggaaggccag
acagacttggcaccttaccgcctgctggtggaggaattcctcgcccagaatgaagtggat
ccgttggatgtcgccgccgctttggcttctatggcccagggtgaccagccgctgctggtc
aaggagcaggaaccgaaaccgcgcagggaaagggagcgccgcgaccgggatgacgaattt
gaaggtcgtcgccgcaagaaagatagttatgaaaaagaccgcaagatgccgtcaccggat
gagggcttagaacgtttccgtatcgaggttgggcgcgagcacggtgtgcgcccaggcagt
atcgtcggtgccattgccaacgaggtggatctggaaagctcctatatcggccgtatcgag
atctacggggatttcactacggttgatctcccggaaggtatgcccaaggaaatactccaa
cacctgaagaaggtgcgggtggccggtaagccgatgaagatttcccgtttcgatgaggac
gcggtcaagccgagagggaaacccaagggtaagccaaagggtaagccacagggcaaacct
aagggcaagcccaagttcaaacgggataatggcggggagtaa
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