Microbulbifer sp. GL-2: GL2_39260
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Entry
GL2_39260 CDS
T07982
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
micz
Microbulbifer sp. GL-2
Pathway
micz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
micz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GL2_39260 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
micz03400
]
GL2_39260 (mfd)
Enzymes [BR:
micz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GL2_39260 (mfd)
DNA repair and recombination proteins [BR:
micz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GL2_39260 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BBM03852
UniProt:
A0A510IY42
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All DBs
Position
4454245..4457724
Genome browser
AA seq
1159 aa
AA seq
DB search
MTDIQPLTPPKFRSSNDRQFWGQLHGAAAALALLNAARNSTSPTLLITRDSLEAHRLEVQ
LKFFNKARGDSATEDAFEIFHFPDWEILPYDTFSPHQDIISDRLATLYRMPKMGSGIVIV
PVSTLMHRLPPCDYVAGNALILNEGQQYDIDTQRRLLEQVGYHCVDTVYEHGEFAVRGSL
MDIFPMGSPLPYRIDLFDDEIESLRTFDPETQRTVDKVETIHLLPAREFPLHKAGLSGFL
QNWHEQFEADPSLVPIYQDISAGIAPAGIEYYLPLFFDNQCASLFDYLPESSQAFVQGDV
QAPIESFWREVSNRYESRRGDLTRPILQPRQILLDIDEFNSALKSMPRVIFSAETLPENQ
GNYNFATKVPPSLPVDGKAEQPMAALDSYLLDYSGRILFCAESGGRREALLELLKGIHLS
PPTFTSWEDFLHSEEPAGITVAPLDQGLLLTDPAINLIAEPQLFGERVLQQRRRKKAKDD
ADNAVKNLAELRIGAPVVHIDHGVGRYRGLQHLEIDGQPAEFLTLEYANEAKLYVPVASL
HLISRYSGADEALAPLHKMGSEQWQKAKRKAAEKVRDAAAELLDIYARREARVGHAFADP
KLAYREFSAGFPFEETPDQQQAIESVVGDMLSKKPMDRLVCGDVGFGKTEVAMRAAFVAA
HAGKQVAMLVPTTLLAQQHFQSLQDRFADWPINIEVISRFRSGKEVDSVKEKVASGKVDI
LVGTHKLLQSDLDFKNLGLLIIDEEHRFGVRQKERLKSLRAEVDILNLTATPIPRTLNMA
MAGIRDLSIIATPPARRLSVKTFVRERDEALVKEAILREILRGGQVYFLHNEVKSIERTA
RELQELIPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVCTTIIETGIDIPTANTILIE
RADKFGLAQLHQLRGRVGRSHHQAYAYLMTPNKRSMTNDAIKRLEAISEAQDLGAGFTLA
THDLEIRGAGELLGEEQSGQIQSVGFNLYMEMLDQAVKAIREGRTPNIDEPLESPAVDVN
LRVPALIPEDYLPDVHGRLMMYKRIANAADRQQLKELQVEMIDRFGLLPEPVKHLFRTTE
IKLKADKMGIRKLEASTVRGRIEFAENTQVDPLTLVKLVQTQPGRYQLAGANQLNFSLDE
QGPDRKLQEINEVLERLAQ
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatatacagcccctgactcccccaaagtttcgcagcagcaatgaccggcaattc
tggggacaactgcatggcgcagcggccgcgctcgcccttttaaacgccgcacgcaacagc
acatccccaacgctgttgattacacgcgacagcctcgaggcgcaccgtttagaggtacaa
ctgaaattttttaacaaggctcggggagatagcgccacggaagacgcctttgagatcttc
cattttcccgactgggaaatcctgccctacgataccttttcaccccaccaggacattatc
tcggaccgcctggcaactctataccggatgccgaagatgggtagcggcattgttatagtg
cccgtaagcaccctgatgcaccgcttgcccccctgtgattatgtagctggcaatgccctg
attctgaatgaggggcagcaatatgatatcgacacccagcggcgcctgctggagcaggtg
ggctaccactgcgtagacaccgtctacgaacatggcgaatttgccgtgcgcggctcgctg
atggatatattcccaatgggcagccccctgccatatcgtattgatctgtttgatgatgag
atcgaatccctacgcactttcgacccggaaacccagcgcaccgtagataaagtggaaacc
attcacttactacccgcacgggaatttccactgcataaagccggcctctccggcttcctg
cagaactggcacgaacaatttgaggcggacccgagcctggtgcccatctaccaggacatc
agtgcaggcattgctcctgcaggtatcgagtattacctgcccctatttttcgataatcaa
tgtgcgagcctgttcgactatctccctgagagcagccaggcttttgtgcagggagacgta
caggctcctattgaaagtttctggcgcgaagtcagcaatcgttatgaaagccgccgcggc
gaccttacccgcccgatattgcagcctcgccaaatcctgctcgatatcgacgaattcaac
agcgccctcaaatcgatgcccagagttatcttctctgccgagacgctgccggagaaccag
ggtaactacaactttgccaccaaggtgccgccgagcctgcctgtagacggtaaagctgaa
caaccaatggctgccctggatagctacctgctcgattattccgggcggatactcttctgt
gccgaaagtggcgggcgccgcgaagccttactggaactgttaaagggtatacatctgagt
ccgcccacgttcaccagttgggaggatttcctgcacagtgaggaacctgcaggcatcacg
gtagcccctctggatcagggcttgctacttacagaccccgctatcaacttaatcgctgaa
ccgcagctgtttggtgagcgagtactacagcagcggcgccgcaaaaaagctaaagacgat
gccgataatgcagttaaaaacctggcggaactgcgcattggggctccggtagtacatatt
gatcacggcgttgggcgctatcgcggtctgcagcacttggagatcgacgggcagcctgca
gaattcctgactctggaatatgccaacgaggccaagctctatgtacctgtggccagtctg
cacttgatcagccgctattcaggagctgatgaagccctggcccccttgcacaaaatgggc
agcgagcagtggcagaaagccaagcgcaaggccgccgaaaaagtgcgcgatgccgccgcc
gaactcctggatatttatgcgcgtcgggaagcccgtgtcggccatgcctttgccgacccc
aaacttgcctatcgcgaattctctgcgggcttcccttttgaggaaacaccagaccagcaa
caggctatcgaatccgtggtcggcgatatgttgtcgaaaaaacccatggatcgcctggtc
tgcggcgatgtgggctttggcaagactgaagttgccatgcgcgcagctttcgtcgccgcc
catgccggtaaacaagtggctatgctggtacccaccaccctacttgcgcaacagcatttt
cagtctctccaagaccgctttgccgactggcctattaatattgaagtgatctcacgtttc
cgctcaggcaaggaagtggacagcgtgaaagaaaaagtggcaagcggcaaagtggatatc
ctggttggcacccataaactactgcagagtgacctggactttaaaaatctgggattactg
atcatcgacgaggagcaccgcttcggcgtacgccagaaagagcggctcaagagcctgcgt
gccgaggtggacattctcaacctgaccgccaccccgatcccacgtactttaaatatggct
atggccggcattcgcgacctctccataatcgccaccccgccagcgcgacgcctatcggtg
aaaaccttcgtgcgcgagcgcgacgaagccctggtaaaggaggcaattctccgcgagata
ttgcgtggcggccaggtgtacttccttcacaatgaggtcaaaagtattgagcgcaccgcc
cgcgaacttcaggagctgatacccgaggcccgtattgggatcggtcacgggcaaatgcgc
gaacgcgagctggagcaggtcatgagtgacttctaccacaagcgtttcaatgtactggta
tgcactactattatcgagaccggtatcgacatccccaccgccaataccattctgattgag
cgcgcggacaaatttggcctggcccagttgcaccagttgcgcggacgtgtgggacgctct
caccaccaagcctatgcttacctgatgacccccaataagcgctcaatgactaacgacgcc
atcaaacgcctggaggccatcagcgaggcccaggaccttggtgcaggctttaccctggct
acccacgatctcgaaatccgcggagctggcgaacttcttggcgaagagcagagcggacag
attcagagtgtcggattcaacctttatatggaaatgctggaccaggcggtgaaggctatt
cgcgaaggacgcacaccaaatatcgatgaaccgctagaatcacccgcagtggatgtgaac
ctgcgggtaccagcactgattcccgaagactacctgcctgacgtgcatggccgtctgatg
atgtacaaacgcatcgccaatgccgccgatcgccagcagctcaaagagttgcaggtggag
atgatcgatcgctttggcctgctgcccgaacctgtgaaacacctgttccgcaccacggaa
atcaagctgaaggcagataagatgggcattcgcaagctagaagcctctacagtacgcggc
cgcattgagttcgccgagaatacccaggtggaccctctgacgctggtgaagttggtgcag
acccagccgggacgctatcaactcgcaggagccaaccagctgaacttcagcctcgacgag
cagggtcccgaccggaagctgcaggaaattaacgaagtactggagcggctggcacagtga
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integrated database retrieval system
