Mycobacterium intracellulare subsp. intracellulare: MIP_01544
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Entry
MIP_01544 CDS
T02325
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mid
Mycobacterium intracellulare subsp. intracellulare
Pathway
mid03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MIP_01544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mid03400
]
MIP_01544
Enzymes [BR:
mid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MIP_01544
DNA repair and recombination proteins [BR:
mid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MIP_01544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFS13064
UniProt:
J9W7H7
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All DBs
Position
1084980..1087247
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AA seq
755 aa
AA seq
DB search
MSPTAGPRVKLTNAEKVLYPATGTTKSDIFDYYTRIAEVMIPHIAGRPATRKRWPNGVEQ
ESFFEKQLAASAPDWLPRASVTHRSGTTTYPIIDDPTGLAWIAQQAALEVHVPQWRFVAE
WTRSRAEELKPGPATRLVFDLDPGEGVTMAQMSKVARAVRDLIAGIGLRTFPLTSGSKGL
HLYAPLDEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFLDWSQNNGSKTT
IAPYSLRGREHPTVAAPRTWDELDDPSLRQLRYDEVLSRVARDGDLLAELDEDAPVPDRL
TKYRSMRDASKTPEPVPAAKPAVGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PETTSVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGKVIIWDSGTYDAEKFLDDEVIVNLH
GSKISGRYALIQTNGDQWLAHRMKDQKVFEFDTIAPMLATHGSVTALKAGQWAFEGKWDG
YRLLIEADHGAFRVRSRRGREVTQEYRELRWLADDLADHHVVLDGEAVVLDSSGVPNFHE
MQNRGRGSRVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLAAGSRLIVPDLLPGDGREAL
EHSAERGWEGVIAKKRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGIGSLL
MGIPTAGGLHFAGRVGTGFTDRDLANLKKTLAPLHTDESPFDPPLPRSEARGVTYVRPEL
VGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgagtccgacggcggggccacgggtcaagctgaccaacgccgaaaaagtgctgtatccc
gccaccggaaccaccaagagcgacatcttcgactactacacgcggatcgccgaggtgatg
atcccgcacatcgccgggcgtccggccacgcgcaaacgctggcccaacggcgtcgaacag
gaatccttcttcgagaagcaactcgccgcgtcggcacccgactggctgccgcgcgccagc
gtgacccatcgatccggaacgacgacctatccgatcatcgacgaccccaccggcctggcc
tggatcgcccaacaggcggcgttggaggttcacgttccgcagtggcggttcgtcgccgag
tggacccgcagccgggccgaagaactcaagcccgggccggcgacgcgattggtgttcgac
ctcgaccccggcgaaggcgtgacgatggcgcagatgtccaaggtggcgcgcgccgtgcgc
gacctgatcgccgggatcgggctgagaaccttcccgctcaccagcggcagcaagggactg
catctgtatgcgccgctcgacgagccggtgagcagcaaaggcgccacggtgttagccaaa
cgcgttgcgcaacagctggaaaagacgatgcccaagcttgtcacgtcgaccatgaccaag
agcctgcgggcggggaagatctttttggactggagccagaacaacggctccaagacgacc
atcgcaccgtattccctgcgcggacgcgaacatcccaccgtcgcggcgccgcgcacctgg
gacgaactcgacgacccgtcgctgcgccagctgcggtatgacgaagtgctgtcccgggtc
gcgcgcgacggcgacctgcttgcagagctggacgaggacgctccggtgccggatcggttg
accaagtaccgcagcatgcgcgacgcgtcgaaaacccccgagccggttccggcggcgaaa
cccgctgtcggccaaggaaataccttcgtcatccaggaacaccacgcgcgacgcctgcac
tacgacttccggctggagcgcgacggcgtgctggtgtcctgggcggtgcccaaaaacctg
cccgaaaccacgtcggtgaaccacctggcggtccacaccgaggaccatccgctggaatac
ggcgggttcgaaggcgtcatccccaagggcgaatacggcgcgggcaaggtgatcatctgg
gactccggaacctacgacgccgaaaagttccttgacgacgaggtcatcgtcaacctgcac
ggcagcaagatctccggacgctacgcgctgattcaaaccaatggcgaccagtggttggca
catcggatgaaggaccagaaggtcttcgagttcgacaccatcgcacccatgctggccacc
cacggttcggtgacggccctgaaggcaggtcagtgggcgttcgagggcaaatgggacggt
taccggcttctgatcgaggccgaccacggtgcctttcgggtgcggtcgcgacgcggtcgc
gaagtcacccaggaataccgcgaactgcgttggctggcagacgatctcgccgaccatcac
gtggtgctcgacggggaggccgtcgtcctggactcctccggggtgcccaactttcacgag
atgcaaaaccgtggacggggctcacgggtcgaattctgggcgttcgacctgctctacctc
gacggccgctcgttgctgcgggcccgctaccgggatcggcgaaaactgctggaaatgttg
gccgccggcagcaggctcatcgtccccgacctactgcccggcgacggcagggaggcgctg
gagcactccgcggagcgcggttgggagggggtgatcgccaagaagcgcgactccacctat
cagccgggccgccgctcgtcgtcgtggatcaaggacaagcactggaacacccaggaagtc
gtcatcggcggttggaaagccggggaaggcggacgcagcagcggcatcggctcactgctg
atgggtatcccaaccgcgggcggactgcacttcgccgggcgcgtcggcaccgggttcacc
gaccgcgacctggcaaacttgaagaagacgctggcaccgctgcacaccgacgaatccccc
tttgacccaccgcttcccaggagcgaagcgcgcggcgtgacgtatgtgcggccggagctg
gtcggggaggtgcgctacagcgagtggaccccggatgaccggttacgccaatcgagttgg
cgcggactacgaccggacaaggaggcgagtgaggtggtgcgcgagtga
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integrated database retrieval system
