Mycobacterium intracellulare subsp. intracellulare: MIP_01717
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Entry
MIP_01717 CDS
T02325
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mid
Mycobacterium intracellulare subsp. intracellulare
Pathway
mid03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MIP_01717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mid03400
]
MIP_01717
Enzymes [BR:
mid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MIP_01717
DNA repair and recombination proteins [BR:
mid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MIP_01717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
DUF1474
Motif
Other DBs
NCBI-ProteinID:
AFS13184
UniProt:
J9W7S1
LinkDB
All DBs
Position
1215498..1219178
Genome browser
AA seq
1226 aa
AA seq
DB search
MEFIMTAPGAARPETPIAGLVELALTAPTFQQLIDSAAASPAELHLVGPASARLFVASAL
ARLGPLLVVTATGREADDLTAELRGVFGDAVAVFPSWETLPHERLSPGVDTVGARLTVLR
RLAHPDDARLGPPLQVVVTAARSLLQPMTPQLGLIEPVTLSVGAEVEFEGVIARLVELAY
TRVDMVGRRGEFAVRGGILDVFPPTAEHPVRIEFWGDEVSEMRMFSVADQRSIPEIEVDT
LIAVPCRELLLTEEVRQRAAELSARHPATEPAITGSVTDMLAKLAEGIAVDGMEALLPVL
RPGEHVLLTDQLAQGTPILLCDPEKIRTRAADLIKTGSEFLEASWSAAAMGTDAPVDVAQ
FGGSGFAELDDVRAAAAKGGHPWWTLSQLSDESAVELDIRAAPSARGHQHDIDGIFAMLR
AHVTTGGYAVVVAPGAGTAHRVVERLAECDTPAAMLESGAAGQVRPKKGIVGVLKGPLHD
GVIIPGATLVVITETDLTGSRVAAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFV
EMVERTVGGARREYLVLEYASSKNRGGAAKNTDKLYVPMDSLDQLSRYVGGQAPALSKLG
GSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGYTETVDQL
TAITEVKGDMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL
QTFTDRMTGFPVTVKGLSRFTDPAESKAVIEGLADGSVDVVIGTHRLLQTGVRWKDLGLV
VVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPV
LTYVGPHDDKQVAAALRRELLRDGQVFYVHNRVSSIDRTAAKIRELVPEARVVVAHGQMP
EERLERTVQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRS
RERGYAYFLYPPHAPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGH
VAGVGFDLYVRLVGEAVEAYRAAADGHTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRL
EAYRRLAAAASDGEIDAVVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAA
TVRLSPMTLPDSAQVRLKRMYPAAGYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANL
VTALQGKAQTDIGITSSPAAMTSEGR
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggaattcatcatgaccgcaccgggggctgctcgcccagaaaccccgatcgcggggctc
gttgaattggcgctcaccgcgccgaccttccagcagctgatcgacagcgcggccgcgtcg
ccggccgaactgcacctggtgggtccagccagcgcacggttgttcgtggccagcgcgctg
gcgcggttgggtcctttgctggtagtcaccgcgaccgggcgcgaagccgacgacctgacc
gctgaactgcgcggcgtcttcggcgatgccgtcgcggtcttcccgtcctgggagacgctg
ccgcacgagcggctctcgcccggcgtcgacaccgtcggcgcccgcctgaccgtgctgcgg
cgcctggcccaccccgacgacgcgcgtctgggccctccccttcaggtcgtggtcaccgcg
gcccgctcgctgctgcagccgatgacaccgcagctcggcctaatcgagccggtcacattg
agcgtcggtgcggaagtcgaattcgagggcgtgatcgcccggctggtcgaactggcctac
acccgggtcgacatggtgggccggcgcggcgagttcgccgtgcgcggcgggattctcgac
gtcttcccgccgacggccgagcacccggtgcgcatcgagttctggggtgacgaggtcagc
gagatgcgcatgttctccgtcgccgatcagcgttcgatcccggagatcgaggtcgacacc
ctgatcgcggtgccctgccgcgagctgctgctcacggaggaggtgcggcaacgggccgcc
gagctgtccgcgcggcacccggcgaccgagcccgcgatcacgggcagcgtcaccgacatg
ctggccaagctcgccgagggcatcgcggtcgacggcatggaggccctgctgcccgtgctg
cggcccggcgagcacgtgctgctgaccgaccaactggcgcagggcaccccgatcctgttg
tgcgaccccgagaagatccgcacccgcgccgccgacctgatcaagaccggcagcgaattc
ctcgaagcctcgtggtcggcggccgccatgggcacggacgcccccgtcgatgtcgcgcaa
ttcggcggatcgggattcgccgagctggatgacgtgcgggccgcggccgccaaaggcggg
catccgtggtggacgttgagccagttgtccgacgagtcggccgtcgagctggacatccgg
gcggcgccctcggcgcgcggccatcagcacgacatcgacggcatcttcgcgatgctgcgc
gcgcacgtcaccaccggcggctacgccgtcgtcgtcgcccccggcgccggcaccgcgcac
cgcgtggtggaacggctcgccgaatgcgacaccccggccgccatgctggaatccggggcc
gcaggccaagttcgacctaaaaaggggatagtcggcgtgctcaagggcccgctgcacgac
ggcgtcatcatccccggcgccacgctggtggtgatcaccgagaccgacctcacgggcagc
cgggtcgccgccgtcgagggcaagcgcctggcggccaagcggcgcaacaccgttgacccg
ttggcgctgaccgccggtgatctcgtcgtgcacgatcagcacggcatcggccggttcgtc
gagatggtcgagcgcaccgtcggcggcgcccggcgcgagtatttggtgctggagtacgcg
tccagcaagaaccgtggtggcgcggccaaaaatacagacaagctttatgtcccaatggat
tcgctggatcagctgtcgcggtacgtcggcgggcaggcgccggcgctgagcaagctcggc
ggcagcgactgggcgaacaccaagacgaaggcgcgccgcgcggtgcgcgagatcgccggc
gagctggtgtccctgtacgccaagcggcaggcgagccccgggcacgcgttcggcccggac
accccgtggcaggccgagatggaagatgcgttcgggtacaccgagaccgtcgaccagctg
accgcgatcaccgaggtcaagggggacatggaaaagccgatcccgatggaccgggtgatc
tgcggcgacgtgggctacggcaagaccgagatcgcggtgcgggcggcgttcaaggcggtc
caggacggcaagcaggtggccgtgctggtgcccaccacgctgctggccgaccagcacctg
cagaccttcaccgaccggatgaccgggttcccggtgaccgtcaagggcctgtcccggttc
accgaccccgcggagtccaaggccgtgatcgagggcctggccgacgggtcggtggacgtg
gtgatcggcacgcaccggctgttgcagacgggggtgcgctggaaggacctcggcctcgtc
gtcgtcgacgaggagcagcggttcggcgtcgagcacaaggagcacatcaagtcactgcgc
acccacgtcgacgtgctgaccatgagcgccaccccgatcccgcgcacgctggagatgagc
ctggccgggatccgcgagatgtcgacgatcctgaccccgcccgaggagcgctacccggtg
ctgacctacgtcggcccgcacgacgacaagcaggtcgcggccgccttgcgccgcgagctg
ctgcgcgacgggcaggtcttctacgtgcacaaccgggtcagctccatcgaccggacggcg
gcgaagatccgggagctggtgcccgaggcgcgggtggtcgtcgcgcacgggcagatgccc
gaagaacggctggaacgcacggtgcaggggttctggaaccgcgaatacgacatcctggtg
tgcaccacgatcgtggagaccgggctggacatctccaacgccaacacgctgatcgtcgag
cgcgccgacaccttcggcctgtcgcagctgcaccagctgcgcggccgggtcggccgcagc
cgggagcgcggctacgcctactttctgtatccgccgcatgcgccgctgaccgagaccgcc
tacgaccggctggccaccatcgcgcagaacaacgagctcggcgcgggcatggctgtcgcg
atgaaggacctcgagatccgcggcgccggaaacgtgttgggcgtcgagcagtccgggcac
gtcgccggcgtcggcttcgacctgtacgtccgcctggtgggcgaggccgtggaggcctac
cgcgcggccgccgacggccacaccgtcacgacggccgaggagccgaaggacgtgcgcatc
gacctgccggtcgatgcgcacctgccgccggactacatcgccagcgaccggctgcggctc
gaggcgtaccgccggctggccgcggcggcctccgacggcgagatcgacgcggtcgtggag
gaactcgtcgaccgctacggcgcgctgcccgagccggccctgcggctggtggcggtggcc
cggctgcggctgctgtgccgcgccgcgggcatcaccgaggtgtcggcgccctcggcggcc
accgtgcggctctcgccgatgacgctgccggattcggcgcaggtgcggctcaagcggatg
tatccggcggcgggctaccgcgccacgacctccaccgtgcaggttcccatcccgcgcgcc
ggcggcgtcggcgcgccgcggctgcgcgatgtcgagctggtgcagatggtggccaacctg
gtgacggcattgcagggcaaggcgcagacggatattggtataacgagttcacctgcggcg
atgacgagtgaggggcgctaa
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