Mycolicibacterium insubricum: MINS_40160
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Entry
MINS_40160 CDS
T06933
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mij
Mycolicibacterium insubricum
Pathway
mij03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MINS_40160 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mij03400
]
MINS_40160 (ligD)
Enzymes [BR:
mij01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MINS_40160 (ligD)
DNA repair and recombination proteins [BR:
mij03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MINS_40160 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Glyco_hydro_65C
DNA_ligase_OB_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBZ68587
UniProt:
A0A1X0DCW1
LinkDB
All DBs
Position
complement(4247690..4249978)
Genome browser
AA seq
762 aa
AA seq
DB search
MDAPGQLRCWPPDHPLVTLTNPDKVLYPATGTTKAEVFDYYVRIAEVMLPHVAGRPATRK
RWPNGVAEPAFFEKQLADSAPDWLARARVPHHSRFTTYPILDSTAALAWIGQQAALEVHV
PQWRFIADAGRVLPGPATRLIFDLDPGPGVGMAQLCAVARAIRVLLESIGLTAYPLTSGS
AGVHLYAPLDKPVSSRGASTLAKRIALQLEKDMPATVTASMAKTARTGRVLVDWSQNSAA
KTTVAPYALRGVDQPTVAAPRTWAELDDPSSLRQLRFDEILDRVGAEGDLLAGMDDEVRA
ADRLTTYRSMRDPARTPEPVPSDAPNPADGNTFVIQEHHARRLHYDFRLERDGVLVSWAV
PKNLPDTPSVNHLAVRTEDHPLEYGSFAGVIPKGEYGAGTVSIWDSGTYDTEKFIDTPER
GEVIVVLHGQRISGRYALIRTGGNQWLAHRMKDQPGATPDLAELKPMLATVGEVSEFDGG
RWAFEGKWDGHRLLVGVDGDEVRLRSRSGREVTAEFPALQSLAPLLAGHRVILDGEVVAT
DQAGRSDFSALRNPGARVEFWAFDVLVLDGRSLLRVPYADRRRVLEALGQATGLTVPPLI
DAATGAAALEFSRQQGFEGVVAKDRTSVYQPGRRSPLWVKDKNWLTQAVVIGGWVPGRGA
RSNTFGALLTGVPSTGGLTYLGKVGTGFDDAELRRLTTLLAEHRSGESPFSGPVPEAAAV
FTAPAVVGEVRYAHRTADGLLRHPSWRGLRPDLSPVDVVLEA
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgcccgggcagctgcgatgctggccgccggatcacccgctggtcaccctgacc
aacccggacaaggtgctctatccggccaccgggaccaccaaggccgaggtcttcgactac
tacgtgcggatcgccgaggtgatgctgccgcacgtggcgggccggccggccacccgcaag
cgctggcccaacggcgtcgccgaacccgcgttcttcgaaaagcaactggccgactccgca
cccgactggctggcccgcgcccgggttccgcatcactcccggttcaccacctacccgatc
ctggattcgacggcggcgctggcctggatcggccagcaggcggcgctggaggtgcacgtc
ccgcagtggcggtttatcgccgacgccggccgggtgctgcccggtcccgcgacccggctg
atcttcgacctcgaccccggaccgggcgtcggcatggcgcagctctgcgcggtggcccgg
gcgatccgagtgttgctggaatcgattgggctgacggcctatccgctgaccagcggcagc
gccggcgtgcacctgtacgcgccgctggacaagcccgtcagctcccgcggtgccagcacc
ctggccaaacgcattgcgctgcaactggagaaggacatgcccgcgacggtcaccgcgtcc
atggccaagaccgcccggaccgggcgggtgctggtcgactggagccagaacagcgccgcc
aagaccaccgtcgcaccgtacgccctgcgcggcgtggaccagcccaccgtcgccgcgccc
cggacctgggccgaactcgacgacccgtcgtcgctgcgccagctccggttcgacgagata
ctggatcgcgttggcgcagagggtgatctgctcgccggtatggacgacgaggtccgcgcc
gccgaccggctgaccacctaccgcagcatgcgcgacccggcccgcacccccgagccggtg
cccagcgacgccccgaatccggccgatgggaacaccttcgtcatccaagaacaccacgcc
cgtcggctgcactacgacttccggctggagcgtgacggcgtgctggtgtcctgggcggtg
cccaagaatctgcccgacaccccgtcggtcaaccacctggcggtgcgcaccgaggaccat
cccctggaatacggcagtttcgccggggtcatccccaagggcgaatacggtgcgggcacg
gtcagcatctgggactccggcacctacgacaccgagaagttcatcgacacccccgagcgt
ggtgaggtcatcgtggtgctgcacgggcagcggatatcggggcgctacgcgctgatccgc
accggcggcaaccagtggctggcgcaccggatgaaggatcagcccggtgcgacaccggat
ctagccgagctcaaaccgatgctggccaccgtcggggaagtctcggagttcgacggtggc
cgctgggcgttcgagggcaaatgggatgggcaccggctgctggtcggtgtcgacggcgac
gaggtccggctgcgttcgcgcagcggccgcgaggtcaccgccgagttcccggcgctgcaa
tccctggcgccgcttttggccgggcaccgggtcatcctcgacggcgaggtggtggccacc
gatcaggccgggcgcagcgacttttcggcactgcgcaaccccggcgcccgcgtcgagttc
tgggcgttcgacgtcctggtgctcgacgggcgctcactgctgcgggtgccctacgccgat
cgccgccgggtactggaggcgctggggcaggccaccggcctgacggtgccaccgctgatc
gacgccgccaccggcgccgcggcgctggagttctcccgacagcagggcttcgagggcgtc
gtcgccaaggaccgcacctcggtgtaccaacccggccggcgctcaccactgtgggtcaag
gacaagaactggctgacccaggcggtggtgatcggcggctgggtgcccgggcgcggcgcg
cggtcgaacaccttcggagcattgctgaccggcgtgcccagcaccggcgggctgacctac
ctggggaaggtcggcaccggtttcgacgatgccgaactgcgcaggctgacaacacttctc
gccgagcatcgcagcggggagtccccgttctccgggccggtacccgaggccgcggcggtg
ttcacggcaccggcggtcgtcggtgaggtccgctacgcccatcgcaccgccgacggcctg
ctgcgccatcccagctggcgcggcctgcgcccggacctgagtcccgtcgacgtcgtgctc
gaggcgtga
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