Microlunatus elymi: FOE78_14435
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Entry
FOE78_14435 CDS
T06101
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mik
Microlunatus elymi
Pathway
mik03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FOE78_14435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mik03400
]
FOE78_14435
Enzymes [BR:
mik01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FOE78_14435
DNA repair and recombination proteins [BR:
mik03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FOE78_14435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QDP96955
UniProt:
A0A516Q0K4
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All DBs
Position
3226166..3228745
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AA seq
859 aa
AA seq
DB search
MAAEQEQSQTVSVDGMLLKISNLDKVLYPATGTTKGDVIAYYTEIAPIMVPHLNGRPVTR
KRWVHGVGTEAEPGAVFFQKNLDPRSTPDWVRRFAIEHRSGTNEYPIVNDLATLAWLAQL
ASLEIHVPQWRFDRDGSVGNPDRLVLDLDPGPGVGLAECAQVAHWARDALQAVGLELFPV
TSGSKGIHLYAHLDGSHSSADASKIAKELARSLQSVHPELVVSEMAKAQRKGKVFIDWSQ
NNANKTTISPYSLRGRMRPTVAAPRTWDELDEDLEQLDYEELSARVGELGDLLAPLIPAE
VDGPVAADSGARDRASVDRLAKYRSMRDPDRTPEPVPAEAPQVRDGDQPMFVIQEHHARR
LHYDFRLEHDGVLVSWAVPKGVPTGTKTNHLAVQTEDHPIEYGSFSGIIPQAEYGGGEVI
IFDTGTFELEKWRDGREVIATLNGTKPGGVGTDCKIALIHTGGRGGQPENHWLMHLMSGS
PTEPVPATPDELTALHEQAARDDDLVWHSNRDEDAGPENPKPARVSEPVEGPSSVVDFPP
EIKPMLASTAEETDFSDERDWAFEMKWDGVRAVCYLAGGQAKILSRRGLESSVSYPEIVD
ALSGIAVDNAILDGEIVALDDHGRPSFSRLQNRMNLTQPTDVARARRTTPVQLVIFDVLY
LDGRSLVKEHYVDRRRRLQELITDGGRIQVPPSFDGDLETALSASESLGLEGVVAKRRTS
IYQAGSRGRTWLKIKNFKTQEVVVGGWRDGNGRRAGTVGALLIGVPDEVGRLRYAGRVGS
GFSDAELERIAKQFRSMARDDCPLDDVPRIDTRDAHWIEPRLVGEVSYGEWTDDHRLRHP
VWRGWRPDKTPDDVRMEPN
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgagcaggagcagtcgcagaccgtttcggtcgacggcatgctgctcaagatc
agcaatctggacaaggtgttgtacccggcgaccggcaccaccaagggcgacgtgatcgcg
tactacaccgagatcgcgccgatcatggtgccgcacctgaacggccggccggtcacccgc
aaacgctgggtgcacggggtcggcaccgaggccgagccgggcgcggtcttcttccagaag
aatctcgatccgcggtcgacgccggactgggtgcgccgcttcgcgatcgagcatcgcagc
ggaaccaacgaatacccgatcgtgaacgatctggccacgcttgcctggttggcccagttg
gcctcgttggagatccacgtgccgcagtggcgattcgaccgagacggatcggtcggcaat
ccggaccggctggttcttgatcttgatcccggtccgggcgtcggtctggccgagtgcgcg
caggtggcccactgggcccgggatgccttgcaggctgtgggtctggagctgttccccgtc
accagtggcagcaagggcatccatctctacgcgcacttggacggcagccacagttcggcc
gacgcgtccaagatcgccaaggaacttgcccgatccctgcagtcggtgcatcccgagctg
gtggtctcggagatggcgaaggctcagcgcaagggcaaggtcttcatcgactggagccag
aacaacgcgaacaagaccaccatctcgccgtactcgctgcggggccggatgcggccgacg
gtcgccgcgccgaggacctgggacgagctggacgaggacctggaacagctggactacgaa
gaactgtcggcacgggtcggcgagctcggtgacctgctggctccgctgatcccagccgag
gtcgacgggccggtcgcggccgactccggcgcgcgcgaccgggcgtcggtcgatcggctg
gccaagtatcggagcatgcgcgacccggaccgtacgccggaaccggtgccggccgaggcg
ccccaggtccgcgacggcgatcagccgatgttcgtcatccaggagcaccacgcccgccgg
ttgcactacgacttccgactggagcacgacggcgtgctggtcagctgggcggtgccgaag
ggggtgccgaccggcaccaagacgaaccatctggcggtgcagaccgaagatcatccgatc
gagtacggcagcttctccgggatcatcccgcaagccgagtacggcggcggcgaagtgatc
atcttcgacaccgggacgttcgaactggagaagtggcgcgacggccgggaggtgatcgcc
actctcaacggcaccaaacccggcggcgtcggcaccgactgcaagatcgcgttgatccac
accggtggtcgcggcgggcagccggagaaccactggctgatgcacctgatgtccggctcc
cccaccgagcccgtgccggcgacaccggacgagctgacagcgctgcacgagcaggcggct
cgtgatgatgatcttgtctggcattccaatcgcgacgaggacgccggacccgagaatccc
aagccagcaagggtttctgagcctgtcgaaggaccgtcgagcgtcgtggattttccgccc
gagatcaaaccgatgctcgccagcacggcggaggagaccgacttctccgacgagcgcgac
tgggcgttcgagatgaagtgggacggcgtacgggcggtctgctatctggccggcgggcaa
gcgaagatcctcagccggcgcggactggagagttcggtcagctaccccgagatcgtcgac
gcactgagcgggatcgcggtcgacaacgcgatcctggacggcgagatcgtcgccctcgat
gatcatggtcggccgagtttctcccgcctgcagaatcggatgaacctgactcaaccgacc
gatgtcgcccgggcccggcggaccacacccgtgcagttggtgatcttcgacgtcctttac
ctggacggccgttcgctggtcaaggagcactacgtcgaccgacgccgccggctgcaggag
ttgatcaccgacggcggccggatccaggtgccgccgagcttcgacggtgatctcgagacg
gcactgtccgccagcgaatccctcggcctggaaggcgtggtggccaagcgccggacgtcg
atctaccaggccggcagccgtgggcgtacctggctcaagatcaagaacttcaagacccag
gaggtcgtggtcggcggttggcgggacggcaacggtcgccgcgccggcaccgtcggcgcg
ctgctgatcggcgtcccggacgaggtcggccggctgcgctatgccggccgggtcggcagc
ggcttctccgacgccgagctggaacggatcgcgaagcagttccgttcgatggcccgggac
gactgcccgctggacgacgtaccgcggatcgatacccgcgacgcccactggatcgaaccg
aggttggtcggcgaggtcagctacggcgaatggaccgatgatcaccgcctccgccacccg
gtctggcgcggctggcgccccgacaagaccccagacgacgtccggatggagccgaactga
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