Microlunatus elymi: FOE78_20390
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Entry
FOE78_20390 CDS
T06101
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mik
Microlunatus elymi
Pathway
mik03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FOE78_20390 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mik03400
]
FOE78_20390 (mfd)
Enzymes [BR:
mik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FOE78_20390 (mfd)
DNA repair and recombination proteins [BR:
mik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FOE78_20390 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDP98983
UniProt:
A0A516Q6D0
LinkDB
All DBs
Position
complement(4480170..4483688)
Genome browser
AA seq
1172 aa
AA seq
DB search
MPAPLRPLFAAAMTASADRGGADAPVLLVTSTYREAEDVTDALQSLLDPNQVAYYPAWET
LPHERLSPRSDTVGRRLAVLRRLVHPEDNGTPLKIIVAPIRSVLQPQVKGLADLKPVHLR
NGEDFELGALAQALVDAAYVRVDLVERRGEFAVRGGIVDLFPPTEEHPVRIDFFGDTVEE
IRYFAVADQRSSDIVIDDITASPCRELLLTDQVKQRAAALMAEHPELSEMLERIAAGHAV
EGMESLSPALVDGMELLVDLLPDGTHVLVSDPELVRTRSADLVKTSEEFLGASWAAAAGG
GQAPIDLGSSAYRPLADVREHALDRGLAWWSLSTFSAAPDAAAMPIRTEEGEVIDFSAAV
STRGVESRTVSAQVPETHRGDAEKSITEIGDHVHDGWQVVLVAEGKGTAQRMVQMLGEQE
IPAKLIEDLDTAPQPRLVTVSVGELRTGVLVDKIKLAVYTTGDLSGQHQIDRAERKMPAR
RKKQIDPLELQPGDPIVHEQHGVGRYQEMVQRTVGGATREYLVVEYAPSKRGQPADRLYV
PMDQLDLVTRYVGGESPTLDRMGGSDWAKRKGRARKAVREIAAELIKLYAARQASRGHAF
SRDTTWQRELEDAFNYVETPDQLVCIDEVKQDMEQIVPMDRLICGDVGYGKTEIAVRAAF
KAVQDGKQVAVLVPTTLLVQQHYNTFADRYAGFPVKVGALSRFSSDLDAKATVAGIAEGS
VDVVVGTHRLLGGSVKFKDLGLVIIDEEQRFGVEHKEQLKKLRMDVDVLAMSATPIPRTL
EMAVTGIREMSTITTPPEERHPVLTFAGPYDEAQVTAAIRRELLREGQVFYVHNRVQSIE
KVARRIRELVPEARVVTAHGQMGEHRLEQVMVDFWERRADVLVATTIVEAGLDISTANTL
IVERADTLGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHDRLATIAAHTDLGAGM
AVAMKDLEIRGAGNLLGGQQSGHIADVGFDLYVRLVGEAVADYRGEGGEPEPEVRIELPI
EAHLPTDYVESERLRLEMYKTIAEVRSTADIDAVRAELTDRYGTPGPEVENLLAVAGFRL
LARQAGLSEVVVQGNFIRFAPVDLPESAQLRLKRLHPGSVIKQTAGLMLVPKPRSRQIGG
PQIKDLELLQWCTEVINNVLIATAAPPARDQS
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgccgctgcgtccgctgttcgccgccgcgatgaccgcgtcggccgaccgcggt
ggagccgacgcccccgtcctcctggtgacctcgacctatcgcgaggcagaggacgtcacc
gatgcgctgcaatcgttgctcgacccgaaccaggtcgcctactacccggcctgggagacc
ctgccgcacgaacgactgagcccgcgttccgacaccgtcggccgccggctcgcggtgctg
cgccgcctggtgcatcccgaggacaacggcaccccgctgaagatcatcgtggcgccgatc
cgcagcgtcctgcagccgcaggtcaaggggctggccgacctcaaacccgtgcatctgcgc
aacggcgaggacttcgagctcggcgcgttggcgcaggccctggttgacgccgcctacgtc
cgcgtcgatctggtcgagcgtcggggcgagttcgccgtccgcggcggcatcgtcgacctg
ttcccgccgaccgaggaacatccggtccggatcgacttcttcggcgacacggtggaggag
atccgctacttcgccgttgccgatcagcgatccagcgacatcgtgatcgacgacatcacc
gcctcaccgtgccgcgagttgttgctcaccgaccaggtcaagcagcgggcagcggccctg
atggccgaacatcccgagctctccgagatgctggaacggatcgccgccgggcacgcggtg
gagggcatggagtcactctcgccggccctggtcgacgggatggagttgctggtcgacctg
ttgcccgacggcacccacgtgctggtgtcggaccccgaactggtccggacccggtcggcc
gatctggtcaagaccagtgaggagttcctcggcgcctcctgggccgcggccgccggcggc
ggtcaggctccgatcgatctcgggtcgtcggcctatcgtccgctggccgacgtccgcgag
cacgccctggatcgcggtctggcctggtggtcgctgtcgacgttcagcgccgcaccggac
gcggcggcgatgccgatccgtaccgaagagggtgaggtgatcgacttctccgccgcggtc
agcacccggggtgtcgaatcccgtacggtctccgcccaggtgcccgagacgcatcgcggc
gacgcggagaagtcgatcaccgagatcggtgatcatgttcacgacggctggcaggtggtg
ctggtcgccgagggcaagggcaccgcgcagcggatggtccagatgctcggtgagcaagag
attccggcaaagttgatcgaggatctcgacaccgcgccacagccgcggctggtcaccgtc
agtgtcggcgaactgcgcaccggcgtgctggtggacaagatcaaactcgccgtctacacc
accggcgacctgtccggtcagcatcagatcgaccgtgccgaacgcaagatgccggcccgc
cggaagaagcagatcgacccgctcgaactgcagcccggcgacccgatcgtgcacgagcag
cacggcgtcggccgctatcaggagatggtgcagcgtacggtcggcggcgccacccgggaa
tacctcgtggtcgagtacgcgccgagcaagcgcggccagcctgccgaccggttgtacgtt
ccgatggaccagctggatctggtcactcgctacgtcggcggtgagagcccgacgttggat
cggatgggcggctcggactgggccaaacggaagggtcgcgcccgcaaggccgtacgtgag
atcgcggcggagttgatcaagctgtacgcggcccggcaggccagccgcggtcacgccttc
tcccgcgacaccacctggcagcgtgagctcgaggatgccttcaactacgtcgagacaccc
gatcaactggtgtgcatcgacgaggtcaagcaggacatggagcagatcgtgccgatggac
cggctgatctgcggcgacgtcggctacggcaagacggagatcgccgtccgggccgcgttc
aaggcggtccaggacggcaagcaggtggcggtgctggtgccgaccacgctgctggttcag
cagcactacaacaccttcgccgatcgctatgccgggttcccggtcaaggtcggcgcgctc
agtcggttctcctccgacctggacgcaaaggcaaccgtggcagggatcgccgagggcagc
gtcgatgtcgtggtcggcacccaccgactgctcggcggcagcgtgaagttcaaggacctg
ggcctggtgatcatcgacgaggaacagcgattcggcgtcgaacacaaggaacagttgaag
aagctgcggatggacgtcgacgtgctggcgatgtcggcgacgccgatcccgcgcaccctg
gagatggccgtcaccggcatccgggagatgtcgacgatcaccaccccgccggaggaacgg
catccggtgctcaccttcgccggaccgtatgacgaggcccaggtgaccgctgcgatccgg
cgcgagctgttgcgcgaggggcaggtcttctacgtgcacaaccgagtccagtcgatcgag
aaggtggcccgccggatccgcgagctggtgcccgaggccagggtggtcaccgcgcacggt
cagatgggtgaacaccggctcgaacaggtcatggtcgacttctgggaacggcgtgccgac
gtgctggtggcgaccacgattgtcgaagcaggcttggacatttccaccgccaacaccctg
atcgtcgagcgcgccgacaccctcgggctgtcccagttgcatcagctccgcggccgcgtc
ggtcgtggtcgtgaacgggggtacgcgtacttcttgtaccccccggagaagccgctgacc
gagaccgcccatgatcgactcgccaccatcgctgcccataccgatctcggcgccgggatg
gcagtggcgatgaaggacctggagatccgcggtgccggcaatctgctcggcgggcagcag
tccggccacatcgccgatgtgggattcgatctctacgtccggctggtcggcgaggccgtc
gccgactatcgcggcgagggcggcgagcccgagcccgaggtcaggatcgaactgccgatc
gaggcgcacctgccgaccgactacgtggagtcggaacggctgcggctggagatgtacaag
accatcgccgaggtccgatcgaccgccgacatcgacgccgtccgggccgagctgaccgac
cgctacggcacgccgggaccggaagtggagaacctgcttgcggtggcgggctttcggctg
ctggcccggcaagccggcctgagcgaggtggtggtgcagggcaatttcatcaggttcgcc
ccggtcgacctgccggagtcggcgcagctgcggttgaagcgtctgcaccccggcagtgtg
atcaagcagacggccggcctgatgctggtgcccaagccgcgatcgcgtcagatcggtggg
ccccagatcaaggatctggagctgttgcagtggtgcaccgaggtgatcaacaacgtgctg
atcgctaccgccgcaccaccagcgcgtgaccagagctga
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