Micromonospora sp. L5: ML5_1128
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Entry
ML5_1128 CDS
T01379
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mil
Micromonospora sp. L5
Pathway
mil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ML5_1128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mil03400
]
ML5_1128
Enzymes [BR:
mil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ML5_1128
DNA repair and recombination proteins [BR:
mil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ML5_1128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
SLFN-g3_helicase
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADU06668
LinkDB
All DBs
Position
1128342..1131998
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AA seq
1218 aa
AA seq
DB search
MLTGLFSAALADPGLARARDLARSGAAQVDGLDLTAPAALRPFAVAAVAADEPAGGAGRP
VLAVTATTREADDLASALGSLLPPEQVAVFPSWETLPHERLSPRSDTVGRRLAVLRRLAH
PDAADAHGRTGPLRVVVAPVRSLLQPQLKGLGDLEPVQLAAGDEADLEEVARRLTDMAYA
RVDLVTKRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEGVAQMWA
PPCRELLLTPAVRERAAALAAEHPELAEILDKLSEGIPVEGMESLAPALIGADALELLVD
CMPAGTHVLLCDPERIRTRAHDLVRTSEEFLQASWAAAAVGGQAPVDLGAAAFKTLAEVR
TAARALRQPWWTLAPFGLVEADAAPARQPWEDEPAAVDVTPDDAIAVSLAAQPAPLYHGE
TARVVDDLKRWAGEGWSIALVFEGHGPAQRAVEVLRDAGLGARLTEEVPAAPAPGELLVS
CGCLTAGFVDEASKFVLLTGNDVTGGRGTSTRDMRKMPSRRRNTIDPLELKAGDFVVHEQ
HGIGRYVELVQRTVNGASREYLVIEYAPSKRGQPGDRLFVPTDQLDQLSRYVGGEQPTLH
KMGGSDWQKSKARARKAVREIAAQLIQLYAARKASKGHNFGPDTPWQRELEDAFPWQETP
DQLAAIEEVKRDMEQTVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQ
QHYNTFAERMSQFPVSIRQLSRFQTPKESEQTLEMVAAGTVDIVIGTHRLLQAATRFKSL
GLVIIDEEQRFGVEHKEHLKTLRASVDVLAMSATPIPRTLEMAITGIREMSTIATPPEER
HPVLTFVGAYDDRQVAASIHRELLRDGQVFYLHNRVESIEKTARRLRELVPEARVAVAHG
QMGEEALEKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLIVERADLLGLAQLHQIRGRV
GRGRERAYAYFLYPPEKPLTENAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQ
SGHIEGVGFDLYVRMVGEAVSAFKGEQQEEEAEVKVDLPIDAHLPHDYVAVERLRLEMYR
KLAEARDSERLREVVAEMTDRYGEPPAPVQNLVAVARFRLLARRYGLTDVSMQGKHIRFG
PLPLPDSKQMRLKRYHPDSVYKQALDQVSVPRPSTRRIGGEPLRDQALLEWCGQLLADVL
GKPEELAGVASPTVASGR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccggactcttctccgccgccctggccgacccggggctggcccgggcgcgtgac
ctggcgcgctccggtgccgcgcaggtcgacgggctcgacctcaccgccccggccgcgctg
cgcccgttcgctgtggcagcggtcgccgccgacgagccggccggaggcgcgggccgcccg
gtgctcgcggtcaccgccaccacccgcgaggccgacgacctggcctccgcgctgggcagc
ctgctgccgccggagcaggtggcggtcttcccgtcctgggagacgctgccacacgagcgc
ctgtcgccccgatccgacacggtcgggcggcgcctcgccgtgctgcgccggctggcccac
ccggacgccgccgacgcgcacggccgcaccgggccgctgcgggtcgtcgtcgcgccggtg
cgctcgctgctccagccgcagctcaagggcctcggcgacctggagccggtgcagctcgcc
gccggggacgaggccgacctggaggaggtcgcccgccggctcaccgacatggcgtacgcc
cgggtcgacctggtcaccaagcgcggcgagttcgccgtacgcggcggcatcctggacgtc
ttcccgcccaccgacgagcacccgtcccgggtcgagttctggggcgacgaggtggaggag
atccgcaccttcgcggtggccgaccagcgcaccatcgagggcgtggcgcagatgtgggcg
ccgccgtgccgggaactgctgctgaccccggcggtgcgggagcgggccgccgcgctcgcc
gccgagcaccccgagctggccgagatcctggacaagctgtccgagggcatcccggtcgag
ggcatggagtcgctcgctccggccctgatcggcgccgacgcgctggaactgctcgtcgac
tgcatgccggccggcacccacgtactcctctgcgaccccgagcgcatccgcacccgcgcg
cacgacctggtccgtacctcggaggagttcctccaggccagctgggccgcagccgccgtc
ggcggccaggcccctgtcgacctcggcgccgccgccttcaagaccctggccgaggtacgc
acggcagcccgcgccctgcgccagccctggtggacgctcgcgccgttcggcctggtcgag
gcggacgcggcgccggcccggcagccctgggaggacgagccggccgctgtcgacgtcacc
cccgacgacgccatcgcggtgagcctggccgcccagccggccccgctctaccacggcgag
accgcccgggtggtcgacgacctgaagcgctgggccggtgagggctggtcgatcgcgctc
gtgttcgaggggcacggccccgcccagcgggccgtcgaggtgctccgcgacgccggtctc
ggcgcccggctcaccgaggaggtgcccgccgcaccggcaccgggcgaactgctcgtgtcc
tgcggctgcctgaccgccggcttcgtcgacgaggcgtcgaagttcgtgctgctcaccggc
aacgacgtcaccggtggccggggcacctccacccgcgacatgcgcaagatgcccagccgg
cggcgcaacaccatcgatccgctggagctgaaggccggcgacttcgtggtgcacgagcag
cacggcatcggccggtacgtggagctggtgcagcgcacggtgaacggcgccagccgcgaa
tacctggtcatcgagtacgcgccgagcaagcgcggccagcccggcgaccgcctgttcgtc
cccaccgaccagctcgaccagctctcccgttacgtcggcggtgagcagcccacgctgcac
aagatgggcggctcggactggcagaagtccaaggcgcgggcccgcaaggcggtccgggag
atcgccgcgcagctcatccagctctacgccgcgcgcaaggcgtcgaaggggcacaacttc
ggtcccgacaccccgtggcagcgtgagctggaggacgcgttcccctggcaggagacgccc
gaccagctggccgccatcgaggaggtcaagcgggacatggaacagaccgtcccgatggac
cggctgatctgcggcgacgtcggctacggcaagaccgagatcgcggtacgggcggcgttc
aaggcggtgcaggacggcaagcaggtggccgtgctggtgccgaccacgctgctggtgcag
cagcactacaacacgttcgccgagcggatgagccagttcccggtgtcgatccggcagctg
tcccggttccagacgccgaaggagtccgagcagacgctggagatggtcgccgccggcacc
gtcgacatcgtcatcggcacccaccggctgctccaggcggccacccggttcaagtctctg
gggctggtcatcatcgacgaggagcagcggttcggcgtcgagcacaaggagcacctgaag
acgctccgcgcctcggtcgacgtgctcgccatgtcggccaccccgatcccgcgcacgctg
gagatggcgatcaccggcatccgggagatgtccacaatcgccaccccgccggaggagcgg
cacccggtgctcacgttcgtcggggcgtacgacgaccgtcaggtggccgcctccatccac
cgtgagctgctgcgcgacggtcaggtcttctacctgcacaaccgggtcgagtcgatcgag
aagacggcccgcaggctgcgggagctggtcccggaggcccgggtggcggtggcgcacggc
cagatgggcgaggaggcgctggagaaggtgatggtcggcttctgggagaaggagttcgac
gtcctcgtctgcaccacgatcgtcgaatcaggcatcgacatcccgaacgccaacaccctc
atcgtcgagcgcgccgacctgctcggcctggcccagctgcaccagatccgcggccgggtc
ggccgtggccgggaacgggcgtacgcgtacttcctctacccgccggagaagccgctcacc
gagaacgcgcacgagcggctggcgaccatcgcccagcacaccgaactcggcgccggcatg
tacgtggcgatgaaggacctggagatccgcggcgccggcaacctgctcggcggcgagcag
tccggccacatcgagggcgtcggcttcgacctgtacgtccggatggtcggcgaggcggtg
tccgccttcaagggcgagcagcaggaggaggaggcggaggtcaaggtcgacctgccgatc
gacgcgcacctgccgcacgactacgtggcggtggagcggctgcgcctggagatgtaccgc
aagctcgccgaggcccgcgactccgagcgtctgcgcgaggtggtcgccgagatgaccgac
cggtacggcgagccgcccgcgccggtgcagaacctggtcgcggtggcgcggttccggctg
ctcgcccgccgctacgggctgaccgacgtgtcgatgcagggcaagcacatccggttcggc
ccgctgccgctgcccgactcgaagcagatgcggctcaagcgctaccacccggactcggtc
tacaagcaggcgctcgaccaggtcagcgtgccccggccgagcacccggcggatcggcggc
gagccgctgcgcgaccaggcgctgctggagtggtgcgggcagctcctggccgacgtcctc
ggcaagcccgaggagctggccggtgttgccagccccacagtggcgagcggacgatga
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