Microbacterium sp. CGR1: AKG07_03410
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Entry
AKG07_03410 CDS
T04046
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mim
Microbacterium sp. CGR1
Pathway
mim03030
DNA replication
mim03410
Base excision repair
mim03420
Nucleotide excision repair
mim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AKG07_03410
03410 Base excision repair
AKG07_03410
03420 Nucleotide excision repair
AKG07_03410
03430 Mismatch repair
AKG07_03410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mim03032
]
AKG07_03410
03400 DNA repair and recombination proteins [BR:
mim03400
]
AKG07_03410
Enzymes [BR:
mim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AKG07_03410
DNA replication proteins [BR:
mim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AKG07_03410
DNA repair and recombination proteins [BR:
mim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AKG07_03410
NER (nucleotide excision repair)
GGR (global genome repair) factors
AKG07_03410
MMR (mismatch excision repair)
DNA ligase
AKG07_03410
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AKG07_03410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
AKV85494
LinkDB
All DBs
Position
729829..732144
Genome browser
AA seq
771 aa
AA seq
DB search
MPENISLEDARIEADELTTRILEAKDAYYGRDTSLVDDFTYDGWMHRLEELERMHPELQG
QDSPTQMVGAAEATGLATIEHAERMLSLDNVFSIDELREWAAKTRASAGRAVDWLTELKI
DGLAINLRYENGRLTSAATRGDGRVGEIVTENALRLPEIPLELSGEGHPPIVEVRGEVFI
PVAAFERLNAAQAEFRDRAYADALARWEARSGAKKPFDEEKARTAAARRFPSFANPRNAA
SGGLRQQIDKKDGLELEAGMLRIESLALYVHGIGAWQNPPVAAQSQVYDKLSDWGLPTSP
HTRVCTSIDDVVAFVEYFGEHRHDIEHELDGIVVKVDELSLHDELGATSRAPRWAIAYKY
PPEEVQTKLLDIVVSVGRTGRATPFAVMAPAQVAGSVVRQATLHNKDVVKAKGVLIGDTV
VLRKAGDVIPEVLGPVVEKRDGTEREFVMPIECPECGTPLRPMKEGDIDLRCPNARSCPA
QVRGRVEHIGSRGALDIEALGEVTAAALTQPTSPATPPLETEAGLFALTLDEIVPIELVV
RDAETGLPKEDEDGLVKTRAPFRRNPTATEKKSGLEGPQPSSQAVTLLAELEKAKTKDLW
RLLVSLNIRHVGPVAARALAQWFGSLDAIRAASRDELAAVEGVGGIIADSLLAWFDVDWH
QDIVRRWAEAGVQWATPGHPGPGAAVVQGGVLDGITVVATGSLDGYTRDGAQEAILKAGG
KAASSVSKKTDFVAAGPGAGSKLGKAEELGIRILDAAQFHILVTEGPDALG
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
gtgccggagaacatctcgctggaagacgcccgtatcgaagcggacgagctgaccactcga
atcctcgaagcgaaggacgcgtactacgggcgcgacacttcactcgtcgacgacttcacc
tacgacgggtggatgcacaggctcgaagagctggagcggatgcatcccgagctgcagggt
caggactcgcccactcagatggtgggggcggccgaggccaccgggctcgccaccatcgag
cacgcggagcggatgctgagtctcgacaacgtgttctcgatcgacgagctcagggaatgg
gccgccaagacgcgcgcctctgcggggcgagctgtcgactggctcaccgaactcaagatc
gacggcctcgcgatcaatctccgctacgagaacgggcggctgacgtctgcggcgacgcgg
ggagatgggcgcgtcggtgagatcgtcaccgagaacgcgctgcgccttcccgagatcccc
ctcgagctcagcggcgaaggtcaccctcccatcgtcgaggtgcgcggcgaggtgttcatt
cccgtggccgccttcgagcgcctgaatgccgcacaggcggagttccgcgaccgggcctac
gccgatgctctcgcccgctgggaggctcggagcggagcgaagaagccgttcgacgaagag
aaggcgcgaactgctgcggctcgacggttcccctcgttcgcgaatccgcggaacgcggcg
agtggtggcctgcgtcagcagatcgacaagaaggacgggctcgaactcgaggcggggatg
ctgcgcatcgagtcgctcgcgctgtacgtgcacggcatcggggcctggcagaatccgccg
gtcgccgcacagagtcaggtctacgacaagctgtcggactgggggctgccgaccagcccg
cacaccagggtgtgcacgagcatcgacgacgtggttgcgttcgtcgagtacttcggcgag
caccgccacgatatcgagcacgagctggatgggatcgtcgtcaaggtcgacgagctgtcc
ctccacgacgagctcggcgccaccagtcgggcgcctcgctgggcgatcgcgtacaagtac
ccgcccgaagaggtgcagacgaagctgctcgacatcgtcgtgtctgtgggtcgaaccggc
agggcgacgccgttcgcggtgatggctcccgcccaggtcgcggggagcgtcgtcaggcag
gcgacgctgcacaacaaggacgttgtgaaagccaagggagtgctgatcggcgacaccgtc
gtcctgcgcaaggcgggcgacgtgatccccgaggtcctcggtccggtcgtcgagaaacgc
gacggtaccgagcgggagttcgtgatgccgatcgaatgccccgagtgcggcacgccgctg
cgtccgatgaaggagggcgacatcgatctgcgctgccccaacgcgcgctcgtgtccggcc
caggttcgcggtcgtgtcgagcacatcggttcgcggggcgccctcgacatcgaggcgctc
ggagaagtcacggcggccgcgctcacccagccgacctcgccggcgacaccgcctctcgag
accgaagccggactgttcgcgctgacgctcgatgagatcgtgccgatcgagctcgtcgtg
cgcgacgccgagacggggctgcccaaggaggacgaagacggtctcgttaagacgagggcg
ccattccgacgcaacccgaccgcgacagagaagaagtcggggctggagggcccccagccc
tcctctcaagctgtgactctgctcgcggaactcgagaaggcgaagaccaaagacctttgg
cggctgctcgtctcactgaacatccgtcacgtcgggccggtcgcggcgagggcgctggcg
cagtggttcggttcactcgacgcgatccgcgcggcctctcgcgacgagctcgccgctgtg
gaaggagtcggcggcatcatcgccgactccctgctcgcgtggttcgatgtcgactggcac
caggacatcgttcgtcgctgggccgaggcaggcgtccagtgggccacgcccggtcatccc
ggtccgggcgcggcagtcgtccagggcggtgtgttggacgggatcacggtcgtcgcgacc
ggttcgctcgacgggtacacccgagatggagcgcaggaggccatcctcaaggcgggcggt
aaggccgcgtcgagcgtctccaagaagacggacttcgtcgcggccggtcccggagcgggg
tcgaagctggggaaggcggaggagctgggcatccgcatcctcgatgccgctcagttccac
atcctcgtcacggaggggccggacgctctgggatga
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