Microbacterium sp. CGR1: AKG07_06770
Help
Entry
AKG07_06770 CDS
T04046
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mim
Microbacterium sp. CGR1
Pathway
mim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AKG07_06770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mim03400
]
AKG07_06770
Enzymes [BR:
mim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AKG07_06770
DNA repair and recombination proteins [BR:
mim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AKG07_06770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AKV87973
LinkDB
All DBs
Position
1401845..1403821
Genome browser
AA seq
658 aa
AA seq
DB search
MVAEAQNVQIDGRRLRITNLDKVVYPETGTTKGEIIAYYTAIAPHLLPLLAGRPVTRKRW
VEGVGTADAPADAFFTKQLEPGAPEWIPRQPIRHSDGPKEYPLVQDVPTLVWLAQVAAIE
LHVPQWRFASDGMPGKPDRLVLDLDPGPGVGLAQCAEVARIARSLLSDIGLDPVPVTSGS
KGIHLYAALPGQQTSAEISAVAKEIARLIETGHPDLATSTMAKAARGGKVFLDWSQNNGK
KTTISPYSMRGRAHPWVAAPRTWDELDDPDLAQLDFATVLERAGSGQDPIAPLLAAQEGP
PDTTSAPGPRVDAHGANSHASRHRPRTTGAAPLASSSPPSISPMLAENGTPAIARTLSSP
SWVEVKWDGIRAIGTWADGRMLLHARSGTDITARYPELTADGAPFLPVSDAIIDGEIVAF
DAQGRPSFSMLQNRMHLTRPREIEREVVRTPIVYMAFDLLRLNGHDLSSMALSERRTLLE
EVVADLDAPVQVPPVFDDLDAALAASDEFGLEGVVVKDPSSRYRPGQRSPAWLKIKHTRM
QEVVIVGIRPGKGDREGTFGSLLLAVPESGRLRYVGRVGTGFTDRMLRDLLSRLAPLRTD
SAPLEDVPALDASDALWVRPELVGEVEFANWTPDGVLRHSRWRGLRPDKTPDEVIVES
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggtcgcagaggcgcagaacgtgcagatcgatggccgccggctgcgcatcaccaacctc
gacaaggtcgtctaccccgagaccggcaccacgaagggcgagatcatcgcctactacacg
gcgatcgcgccgcacctcctccctctgctcgcgggccgccccgtgacccgcaagcgctgg
gtggaaggggtggggaccgcggatgctcccgccgacgcgttcttcacgaagcagctcgag
ccgggagctccggaatggatcccccgacagccgatccggcactcggacggccccaaggag
tatcccctcgtccaggacgttcccacgctggtctggctcgcgcaggtcgccgcgatcgag
ctgcacgtgccgcagtggcgcttcgcctccgacggcatgccgggaaagccggatcggctc
gtcctggatctcgacccgggcccgggggtcgggctcgcccagtgcgccgaggtcgcacgg
atcgcacgcagcctgctcagcgacatcggactcgatccggtgcccgtgaccagcggaagc
aaagggatccacctctacgccgccctccccgggcagcagacgagcgcagagatatccgcg
gtcgcgaaggagatcgcccgtctgatcgagaccgggcatccggatctcgccacgagcacg
atggccaaggccgcgcgcggcggcaaggtctttctcgactggagccagaacaacggcaag
aagacgacgatctcgccgtactcgatgcgtggtcgcgcgcacccctgggtggcggctccg
cgcacctgggacgaactcgacgaccccgacctcgcgcagctcgacttcgcgacggtgctc
gagcgtgcgggttccgggcaggaccccatcgctccgcttctcgccgcccaggagggcccc
ccggacaccacctctgcgccgggcccccgcgtcgacgcacacggcgcgaactcgcatgcg
agccgccaccgcccgcggacgaccggtgcggcaccgctggcctcgtcgtctcccccctcc
atctcccccatgctggccgagaacggcacgccggcgatcgcccgcactctgagctctccg
tcgtgggtggaggtgaagtgggacggcatcagggccatcggaacctgggcggacggacgg
atgctgctgcatgcccgcagcggcaccgacatcacggcccgctaccccgagctgactgcc
gacggcgcgccgttcctgcccgtgtccgatgcgatcatcgatggcgagatcgtcgccttc
gatgcgcagggcaggccgagcttctcgatgctgcagaaccgcatgcacctgactcggccc
cgcgagatcgaacgcgaggtcgtgcgcacgcccatcgtctacatggctttcgatctgctc
cgcctgaacggtcacgacctcagctccatggcgctgtcggagcgacggaccctcctcgag
gaggtcgtcgccgacctcgatgcgccggtgcaggtcccacccgtgttcgacgatctcgac
gccgctctcgcggcgagcgatgagttcggcctcgagggcgtcgtcgtcaaggatccgtcc
tcgcggtaccgtccgggccagcgctcaccggcctggctgaagatcaagcacacccgcatg
caggaggtcgtgatcgtcggtatccgccccggcaagggcgaccgggagggcacgttcggc
tccctgctgctcgcggtccccgagtccggacggctgcgctatgtcggtcgcgtcggcacg
ggattcaccgaccggatgctgcgcgacctgctgagccggctcgctcccctgcgcaccgac
tccgcgcccctcgaggacgtgcccgcgctcgatgcgtcggatgcgctctgggtccgacct
gagctcgtcggcgaggtcgagttcgcgaactggaccccggacggcgttctgcgtcactcc
cgttggcggggactccggccggataagactcccgacgaggtgatcgtcgagtcctga
DBGET
integrated database retrieval system
