Mangifera indica (mango): 123192428
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Entry
123192428 CDS
T07684
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
minc
Mangifera indica (mango)
Pathway
minc03022
Basal transcription factors
minc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123192428
09124 Replication and repair
03420 Nucleotide excision repair
123192428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123192428
03400 DNA repair and recombination proteins [BR:
minc03400
]
123192428
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123192428
DNA repair and recombination proteins [BR:
minc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123192428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
123192428
NCBI-ProteinID:
XP_044460906
LinkDB
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Position
12:complement(13504585..13511596)
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AA seq
450 aa
AA seq
DB search
MPEVRIIAKNFMDMVASLTARDLDKLYNNPFICEAILRSLPPLAKKYVLEMLYMDSALPA
KSVEEWVLSDGFTKHRVAIDRLVQLRIFSEEKKKETSYKLNPTFQANLRKHLIYGGALPR
EPMPSNITVRLPSLEELEAYAVGQWECFLLQLISSSQAEKTTNFSSSMMKVFQRGLLTQR
EKESPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGVSQADLISFLLELSFHVAGEAY
NINTLSDLQRNMIKDFADLGLVKLQQGRKESWFIPTKLATNLSVSLTESSSRKEGFVVVE
TNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLRQ
NAHSRVADKVPSVPENVSDQIRLWESDLNRVEMTLAYFYDEFPSRDVFEAACEYARDHGG
LLWEDSKRMRLSVKAEIHMNMREFLRGQSK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgccggaagtgaggattatagctaaaaattttatggacatggtagcctcgttgaccgcc
agggacctcgataagctctacaacaatcccttcatttgcgaagccattctaaggtcactg
ccccctctcgcgaagaagtatgtgttagagatgttgtatatggattctgcgttaccagca
aagtcggtggaggagtgggtgctttcagatggattcaccaagcacagagttgccattgat
cggttggttcagttgagaatattttcagaggaaaagaaaaaggaaaccagttacaaatta
aatccaactttccaggccaaccttcgaaagcatttgatatatggtggagctttgccaagg
gaaccaatgccttcaaatattactgtgaggcttccaagcttggaggaacttgaggcttat
gccgttggacagtgggagtgtttcttgctgcaacttattagttcctcacaagctgaaaag
acaacaaatttcagctcttccatgatgaaggtttttcagcgaggacttttgactcaaagg
gaaaaagaatccccaagattaacggagagtggctttcaatttttgctgatggataccaat
gcacagctctggtacattgtcagagaatatatctctaattctcaggaacgaggtgtcagt
caagcagatttaatttcatttcttctagagcttagttttcatgttgctggtgaggcatat
aatataaatacgctgagcgatctacagaggaatatgatcaaggactttgctgacttggga
ttggtcaaacttcaacagggcaggaaagagagttggtttatacctaccaaattagctacc
aatctttcagtgagcttgactgagtcatcatcacggaaagagggttttgttgttgtggaa
acaaacttcaggatgtatgcttactcaacatctaagttgcactgtgaaattttgcgcctt
ttctcgaggatagagtatcaacttccaaaccttatagtgggagcaataacaaaggaaagt
ttgtataatgcttttgagaatggcatcacggcagagcaaataatttcttttcttcggcag
aatgcacattctcgagttgctgataaagttccatcagtaccagagaatgtatctgatcag
ataagactgtgggaatcagatctgaatcgggtagagatgacccttgcttatttctatgat
gaatttccttcaagggatgtctttgaagctgcttgtgaatatgcacgagatcatggtggt
ctgctatgggaggattcaaaaagaatgcgtctatcagtcaaggcagaaattcacatgaac
atgcgagagtttcttcggggtcaaagcaagtag
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