Mangifera indica (mango): 123201943
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Entry
123201943 CDS
T07684
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
minc
Mangifera indica (mango)
Pathway
minc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123201943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123201943
03019 Messenger RNA biogenesis [BR:
minc03019
]
123201943
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123201943
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123201943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
123201943
NCBI-ProteinID:
XP_044473499
LinkDB
All DBs
Position
18:6467036..6474798
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AA seq
1085 aa
AA seq
DB search
MENPPRSFDRSALVKKPRLTEDPTRSFTQRAAVAQRFSTSRDSEVDERAGGAYQPQQPHQ
ELVSQYETALAELTFNSKPIITNLTIIAGENVHAAKAIAATVCSNILEVPSEQKLPSLYL
LDSIVKNIGRDYIKHFAPRLPEVFCKAYKQVDSSVHSSMRHLFGTWKGVFPPQTLQMIEK
ELGFIPMINGSSSGTTSRADLQSQRPPHSIHVNPKYLERHRFQQSCQAKGMVNDMAGPTA
STTVDAERPDRSLSISTSRSWVEPSVKMHSFRHSYREAQCEPIPRKNIGETYGEYEYGSD
LLQNSGLGIGRTTGRVIDQGNDKSWGGVGNNIAETISGQRNSSNNKHSFPNYPVSKSANA
DLHLQPTQKISSRSSSGMSSSWKNSEEEEFMWEMHSRLSDNDAASIPIISRKDRWTPDDP
EKLEIENHLQKPQNVHDVGSRFDRETSTDSLSTEHKAQETYGRRKSTIWPLKESHLEGYS
ATLVGLPTSTSSSLARTGGRPPFGSSHFGASDFGVLSNSAIRSTGSMGQQSFQSARDGSP
SEQSTMLQCPPSPSLSAHHHHQNLQNLTEQDYPHILFLPRPDSKASSFSGHLNSGPISHS
SKDSSSVLNSNRHLGNLEKFQPQDLKGSSPGGSSFQLNHHNPLIQPLQPDPKQPEPSGLP
PKPLPSEPSNFGTSSTIGNAFDHSNTLDGETSGQLSTSTLLAAVLKTGILSNSITSGLVS
QTFQDVGKMPSRSDIQPPLLCGPLPTVVTSSGPRAVSGTLSCPAAHDKSSATANNSHGKV
ESPPLPPSPLPSSLLNCASTQSSNFESKSSNPISNLLSSLVAKGLISASKNESPSVLAPQ
IPTQTQNQSPGVSSSTLAPVSSVPSSSSIPRTSTMDEASFPEPAAESSVDVAHSTSVEME
NLIGLEFKTDMIREVHPTVINRLFDDLPHSCSICGLRLKLQERLDRHFEWHTLRRPGPDI
VVRRSFYARSDDWVAGKPGLPLGFESANPNESGKIVDEGEPMVPADDNEYACVLCGELFE
DYYDKERDEWMFKEAVYMTTLFKDTEVATEDACAAKGPIVHANCISESSSHDIRLNSGVK
MEMDT
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggagaatccgcctagatcgttcgatagatcggctttagttaaaaaacctcgattaacg
gaagatccgacccggagttttactcagagagcagccgtagctcaaagatttagtacaagt
agagattcagaggtcgatgaacgagctggtggcgcatatcagccacagcagccacaccaa
gagctggtgagtcagtacgagactgcgctagcggaactgaccttcaattcaaagccgata
ataacgaatttgactataattgctggcgagaatgttcatgccgcgaaagcaatcgcggcc
actgtctgctctaacattctcgaggttcccagtgagcaaaagctgccatctctctatctt
ttagatagtattgtaaagaatattggaagggactacataaaacattttgctcccagacta
ccagaggtcttttgcaaggcttataaacaggttgattcttctgttcattcgagtatgcgg
catctttttggaacttggaagggagtttttcctcctcagacccttcagatgattgagaaa
gaacttggcttcattcctatgatcaatggttcatcttcaggaacaacatccagggctgat
ttgcagtctcagcgcccaccacatagcattcatgtgaatcctaaatacttagaaaggcac
cgctttcagcagtcatgccaggcaaaaggaatggttaatgacatggctgggcctactgcc
agcactactgtagatgccgagaggccagataggtcattaagcatcagcaccagcaggtca
tgggtggaaccttcagtcaaaatgcatagctttcggcattcatacagagaagcgcaatgt
gagcctatccctcggaagaatattggtgaaacctatggagaatacgaatatggctctgat
cttttgcagaattctggcttgggaattggaagaaccactggaagggttattgatcaagga
aatgacaaatcttggggtggagttggtaacaacattgcagaaacaatatctggccaaaga
aatagtagcaataacaagcatagctttccaaattacccagtttccaaatctgcaaatgct
gatctgcatctacagccaacacagaagatatcaagtagaagcagcagtggcatgtctagt
agctggaaaaactctgaggaagaggagtttatgtgggagatgcactcaagattatcagat
aatgatgcagccagtattcctatcatttcaaggaaggatcgttggactccggatgatcca
gaaaaattggaaattgagaatcacctccaaaagcctcaaaatgtgcatgatgttgggtca
aggtttgacagagaaacttccactgattccctttctactgaacacaaagcgcaagaaact
tatgggcgcagaaagtcgacaatatggccattgaaggagtcacacttagaaggctattct
gccacccttgttgggttgcctacgagcacaagttcttccctggccaggacaggaggtcgt
ccaccttttggttcatctcattttggggcgtctgattttggggttttgtcaaattcagca
attagatctactggtagcatggggcaacaaagttttcagtctgcaagagatggatcaccc
tctgaacagtcaaccatgctccagtgtcctccatcaccttccttatcggcacatcatcac
catcagaacttgcaaaatttgaccgagcaagactatcctcatattctttttctgcctcga
cctgattcaaaagcatcttcattctcaggacatttgaacagtgggcccattagccactct
agtaaggattcttcatccgttctgaattctaatagacaccttggtaacttggaaaaattt
cagccccaagacttgaaagggtcatctcctggaggctcttcttttcagttaaaccatcac
aatcctcttatacagccactgcaaccagatcccaagcagcctgaaccttccggtctgcct
ccaaagccacttccttctgaaccttctaattttggaacttcctcaacgattggaaatgca
tttgatcattcaaatactcttgatggagaaacttcaggacaattgagcacaagtacattg
ctagctgctgtcttgaagactggtattctttctaattcaatcactagtggcctagttagt
cagacattccaggatgtgggaaaaatgccatcacggtcagatattcaacctcctctgcta
tgtgggcctctacctactgtggttacctcctcaggacccagggctgtgtcaggaactctt
tcttgtcctgctgcccatgataagtcatcagctacagcaaataattcccatggaaaggta
gaatcaccaccactgccacctagtcctctaccttcatctcttctaaattgtgcatcaaca
caaagttccaattttgaaagcaagtcctcaaaccctatttcgaacctcttgagctcgtta
gttgcaaagggtctgatatctgcatcaaagaatgagtcaccatctgtcttggctccccaa
atccctactcagacacagaatcaaagtccaggggtctcttccagtactcttgcacctgtg
tcttctgttccaagttcatccagcattcctcgaacttccaccatggatgaggcatctttt
ccagaacctgctgctgaaagttcggtcgatgtagctcattccacttcagtggagatggaa
aatctcataggtttggagtttaagacggatatgatccgtgaagttcatccaactgtgatc
aatagactgtttgatgacttaccgcatagctgtagcatatgtggtcttcgacttaaactc
caggagcggcttgatagacactttgagtggcatactttaagaaggcctggaccagatatt
gtagttagaaggagtttttatgctaggtcagatgactgggttgctgggaagccaggactt
ccattgggatttgagtctgccaatccgaatgagtctggtaaaatagtggacgagggtgag
ccaatggttcctgcagatgataatgaatatgcatgtgttttgtgtggtgagctttttgaa
gattattatgacaaagaaagggatgaatggatgttcaaggaagcagtatatatgactact
ctgttcaaggacactgaggtagcaacagaagatgcgtgtgctgctaagggtcccattgtt
catgcaaattgtatatcggaaagttcgtctcatgacatcagacttaatagtggtgttaaa
atggaaatggatacataa
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