KEGG   Mangifera indica (mango): 123209725
Entry
123209725         CDS       T07684                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
minc  Mangifera indica (mango)
Pathway
minc03082  ATP-dependent chromatin remodeling
minc03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:minc00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    123209725
   03083 Polycomb repressive complex
    123209725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:minc03036]
    123209725
Enzymes [BR:minc01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     123209725
Chromosome and associated proteins [BR:minc03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     123209725
   HDAC complexes
    Sin3A-HDAC complex
     123209725
    BRAF-HDAC complex
     123209725
    REST complex
     123209725
    SHIP complex
     123209725
    MiDAC complex
     123209725
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     123209725
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    123209725
  Chromatin remodeling factors
   NuRD complex
    123209725
SSDB
Motif
Pfam: Hist_deacetyl ANKH
Other DBs
NCBI-GeneID: 123209725
NCBI-ProteinID: XP_044483788
LinkDB
Position
2:19696563..19701659
AA seq 431 aa
MKPHRLCMAHHLVLSYELHKKMEVYRPHKAYPVELAQFHSAEYVEFLHRITPDTQHLFSH
ELAKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASG
FCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDMFFPGT
GDVKEIGEREGKYYAINVPLKDGIDDTSFTRLFKTIISKVVETYVPGVIVLQCGADSLAG
DRLGCFNLSIDGAYIFLVGNGSIDFVVVNFSFVATLFAGHAECVRFVKKFNLPLLVTGGG
GYTKENVARCWTVETGVLLDTELPNEIPENEYIKYFAPECSLRIPTGHIENLNSKSYLST
IKMQVLENLRCIQHAPSVQMQEVPPDFYIPDFDEDEQNPDERVDQHTQDKQIQRDDEFYE
GDNDNDHMEVG
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgaagccacatcggctttgtatggcacaccatctcgttctatcatatgagcttcacaag
aagatggaagtttatcgtccccacaaggcctaccctgtggagcttgcacagttccattct
gctgagtatgttgaattcttacaccggattacccctgacactcaacatttgttctcacat
gaattagctaaatataatcttggagaagattgccctgtctttgaaaacttgttcgaattt
tgtcaaatttatgctggtgggacaatagatgctgcacgtagattaaacaatcagctctgt
gacattgccataaattgggcgggggggttacaccatgcgaagaagtgtgaagcttctggt
ttctgttacattaatgacttggtcttggggatcttggagcttttgaaataccatgcccgt
gtgttgtatattgatatagatgtccatcatggagatggtgttgaagaagctttttatttc
acagacagggtgatgactgttagttttcacaagtttggggatatgttctttcctggaact
ggggatgttaaggaaataggagaaagagaaggcaaatattatgctataaatgtcccactc
aaggatggaattgatgacactagcttcactcggcttttcaagacaattatctccaaggtt
gttgagacatatgtaccgggtgtcatagttcttcaatgtggggcagattctcttgctgga
gatcgcttaggctgtttcaatctctccattgatggtgcatatatctttctagttggcaat
ggttcaatcgattttgttgttgtcaacttttcctttgtggcaacactttttgcagggcat
gctgaatgtgttcggtttgtgaagaaattcaatttgcccttgctggttacaggaggtggg
ggatacacaaaagaaaatgttgctcgatgttggactgttgaaacaggagtacttttggat
acagagcttcccaatgagatcccagagaatgaatacatcaagtattttgcccctgaatgt
tcattgaggattccaacagggcatatagagaatttgaatagcaaatcatatcttagcaca
ataaaaatgcaagtattggaaaatcttcggtgcatccaacatgctccaagtgttcaaatg
caggaggttccacctgacttctatattcctgattttgatgaggatgagcagaaccctgat
gaacgagtggatcagcacactcaagacaagcaaatccaacgtgatgatgaattttatgaa
ggagacaatgataatgatcacatggaggttgggtaa

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