Mangifera indica (mango): 123216148
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Entry
123216148 CDS
T07684
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
minc
Mangifera indica (mango)
Pathway
minc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123216148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
minc03021
]
123216148
03019 Messenger RNA biogenesis [BR:
minc03019
]
123216148
Transcription machinery [BR:
minc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123216148
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
123216148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
123216148
NCBI-ProteinID:
XP_044492453
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All DBs
Position
1:4268278..4275816
Genome browser
AA seq
1080 aa
AA seq
DB search
MENPRRSFDRSGFVKKPRLTEDPTRSFTQRPVVAQRFSTSRDTEVHERSGDAYQPQQPHQ
ELVSQYKTALAELTFNSKPIITNLTIIAGENVHAAKAIAATVCANILEVPSEQKLPSLYL
LDSIVKNIGRDYIKHFAPRLPEVFCKAYKQVDSSVHSSMRHLFGTWKGVFPLQTLQMIEK
ELGFXPMINGSSSGTTSKPNLQSQRPPHSIHVNPKYLERQRLQQSGRAKGLANDMTGPVT
STTVDAERPERTASVSNSRPWVEPSVKMHSFQHSHRNALSEPIHEKNIGAAYGEYEYGSD
LSQNAGLGIGRTTGRNSDQGNDKSWGGVGSNIAETISGQRNGFNIKQGFPNYSASKSANP
DVHLQPTQKIASRSSSGMSNSWKNSEEEEFMWEMHSRLLDNDAVNIPINSGKDRWPPDDP
EKMEFESHLRKPQNVHDVGSRFDRGTTEDSLSTEQKDQATYGQRKSTMWPLKESHSEGYS
ATLGGLPTSTNSSLARMGGHPPVGSSHIGASSFGVLSSSAVGSAGSLGQQRFQSARAGSP
SEQSAMLQHPQPPLLPANRPHQNLKNLAEQDHPHVQSLPRPDSKATPFSGHLGGGPISRT
SKDSLSMQHSNSLLGNMQKFQPQELKASSPGGSSFQLSDHYPLTQPLPTDLKQPEPSGLS
PKPLPPNFGTPLMTGNASDHSNRLDGENLGQSSTSTLLAAVLKSGILSNSITSGLANRTV
QDVGEIPSRSDIQPPLPSGPPPTLVTSSGPMAVSGPASCDKSSATANSSHGKVGPPPPPL
PPGPPPSSLMGIASAQVSNVESKSSNPISNLLSSLVAKGLISASKNESPSLMAPLIPTQA
QNQSAGDSSSSLAPVSSVPSSSSIPPTSTMDEASFPEPVAESSVALPQSSSVEMENLIGL
EFKTDIIREFHTTVIDRLFDDLPHSCSICGLRLKLQEQLDRHLEWHALRRPGSDAVVRRS
FYAKSDDWVVGRAGFPLGFESAILKESGKIMDKGEPMVPADDNESACVLCGDLFEDYYDQ
ERDEWMFREAVYMTTLFKDGEAATKDESAAKGPIVHAKCISESSPHDLGLVSGVKMEMDT
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggagaatccgcgtagatcattcgatagatcgggttttgttaaaaaaccgcgattaacg
gaagatccgacccgaagctttactcagagaccagtcgtagcacaaagatttagtacgagt
agagatacggaggtccatgaacgatctggtgatgcttatcagccacagcagccacaccaa
gagctggtgagccaatacaagacggcgcttgcggaactgaccttcaactcgaagcctata
ataactaatttgactataattgccggtgagaatgttcatgccgcgaaagcaatcgcagcc
acagtctgcgctaatattcttgaggttcccagtgagcaaaagctgccatctctctatctt
ttagatagtattgtaaagaatattggaagggattacataaaacattttgctcccagactg
ccagaggtcttttgcaaggcatataaacaagttgattcatctgttcattcaagtatgcgg
catctttttggaacttggaaaggagtttttcctcttcagacccttcaaatgattgagaaa
gaacttggtttcnaccctatgatcaatggttcatcttcaggaacaacatccaagcctaat
ttgcagtcacagcgcccaccacatagcattcatgtgaatcctaaatatttagaaaggcag
cgccttcagcagtcaggcagggctaaaggattggctaatgacatgactgggcctgttaca
agcacaactgtagatgccgagaggccagagagaacagccagcgtcagcaacagcaggcca
tgggtggaaccttcagtcaaaatgcatagctttcagcattcacacagaaatgctctaagt
gagcctatccatgagaagaacattggtgcagcctatggagaatacgaatacggctctgat
ctttcgcagaacgctggcttgggaattggaagaactacaggaaggaatagtgaccaggga
aatgacaaatcttggggtggagttggtagcaacatagcagagacaatatctggccagaga
aatggttttaatatcaagcagggttttccaaattactcagcttccaaatctgcaaatccc
gatgtgcatctgcagccaacacagaagattgcaagtagaagcagcagtggcatgtctaat
agctggaaaaactcagaggaagaggagtttatgtgggagatgcactcaagattattagat
aacgatgcagtcaatattcctatcaattcagggaaggatcgttggcctccagatgatcca
gaaaaaatggaatttgaaagtcacttgcgaaagccacaaaatgtgcatgatgttgggtca
aggtttgacagaggaactacagaggattccctgtctactgaacagaaagatcaagcaact
tatgggcaacggaaatctacaatgtggccattgaaggagtcacactcagaaggctattct
gccacccttggtgggctgcctacaagcacaaattcttctcttgctaggatgggtggtcat
ccccctgttggttcatctcatattggggcctcaagttttggggttttgtcaagttcagct
gtgggatctgctggaagcttggggcaacaaagatttcagtctgcaagagctggatcacct
tctgaacagtctgctatgctccagcatcctcaaccacctttgttaccggcaaatcgtccc
caccaaaacttgaaaaatttggctgagcaggaccatcctcatgttcagtccctgcctcga
cctgattcaaaagcaactcccttttcaggacatttgggtggtgggccaattagccgcact
agcaaggattctctatccatgcagcattctaatagtctccttggtaacatgcaaaagttt
cagcctcaagagttgaaggcttcatctcctggaggctcttcttttcagctaagtgatcac
tatcctctcacacagccactgccgacggatctcaagcagcccgaaccttctggtctgtct
ccaaagccacttccacctaattttggaactcccttaatgactggaaatgcatctgatcat
tcaaatagacttgatggcgaaaatttaggacaatcaagcacgagtacattgttagctgct
gtcttgaagagtggtattctttccaactcaatcaccagtggcctagctaatcggactgtc
caagatgtgggagaaatcccatcacggtcggatattcaacctcctctgccgagtggacct
ccacctacgttggttacctcctcaggacccatggctgtgtcaggtcctgcatcctgtgat
aagtcatcggctacagcaaatagttcccatggaaaggtaggaccaccaccaccaccactg
ccgcctggtcctccaccttcatctcttatgggtattgcatcagcgcaagtttccaacgtt
gaaagcaagtcttcaaaccctatttcaaatctgttgagctcgctagttgcaaaaggtctg
atatctgcatcaaagaatgagtcaccatctctcatggcacccctaattcccactcaggca
cagaatcaaagcgcaggggactcttcaagtagtcttgcaccagtgtcttctgttccaagt
tcatcaagcattcctccaacttccaccatggatgaggcatcttttccagaacctgttgct
gaaagttcggttgccttacctcagtcctcttcagtggagatggaaaatctcataggtttg
gagtttaagacagatataatccgcgaatttcatacaactgtgattgatagactttttgat
gacttaccacatagctgcagcatatgcgggcttcgacttaaactccaagaacagcttgat
agacacttggagtggcatgctttaagaaggcctgggtcagatgctgtagttagaaggagt
ttttatgcaaagtcagatgactgggttgttgggagggcaggatttccgctgggatttgag
tctgccattctgaaagagtctggtaaaataatggacaagggtgagcctatggttcctgca
gatgataatgaaagtgcatgtgttttgtgtggtgaccttttcgaagactattatgatcaa
gaaagggatgaatggatgttcagggaagctgtatatatgactacccttttcaaggatggt
gaagctgcaacaaaagatgagagtgctgctaagggtcccattgttcatgcaaagtgtata
tcagaaagttcgcctcatgacttgggacttgttagtggtgttaaaatggaaatggatact
taa
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