Macadamia integrifolia (macadamia nut): 122067148
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Entry
122067148 CDS
T07436
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03022
Basal transcription factors
ming03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122067148
09124 Replication and repair
03420 Nucleotide excision repair
122067148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ming03021
]
122067148
03400 DNA repair and recombination proteins [BR:
ming03400
]
122067148
Transcription machinery [BR:
ming03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122067148
DNA repair and recombination proteins [BR:
ming03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122067148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Tfb4
IBR
Motif
Other DBs
NCBI-GeneID:
122067148
NCBI-ProteinID:
XP_042486926
LinkDB
All DBs
Position
Unknown
AA seq
440 aa
AA seq
DB search
MSGIGIDRRFEPRNSYNGDERRLAAEGEEEEEEDDDGGNGRGMEAWERAYADERSWESLQ
EDESGLLRPIDSNVLHHAQYRRRLRSLSSSTASSRIQKGLIRYLYIVIDLSRAAAEMDFR
PSRMVVVAKHVEAFIREFFDQNPLSHIGLVTIKDGVAQCLTDLGGSPESHIKALMGKLEC
SGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDVMETVQKCKKSKIRCSVV
GLSAEIYICKHICQETGGSYTVALDESHFKELLLDHAPPPPAIAEFAVANLIKMGFPQRA
AEGVVSICACHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIT
PFDEVPPSLLNNPQNQLPRTCFGCRQSLLHSGNKSSFRVACPKCNQHFCLDCDIYIHESL
HNCPGCESLRRSNVMNSTKV
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcattggtatcgataggagattcgaacccagaaattcctacaatggtgacgag
cggcgattggccgcagaaggcgaagaagaagaagaggaagacgacgatggcggaaatggg
agaggtatggaagcgtgggagagagcatatgcggacgagagatcttgggagtctcttcaa
gaggatgagtccggccttcttcgccccatcgacagtaacgttcttcatcacgcacagtat
cgtcgccgcctccgttccctatcctcatctaccgcatcctccagaatccagaagggcctc
attcgctatctttacattgtcatcgatctttctagggcagctgcagaaatggatttccga
ccaagtcggatggttgtagttgcaaaacatgtagaggcctttattagagagttctttgat
cagaacccacttagtcatattggcctggtaactataaaagatggagttgctcagtgctta
acagatttaggtggcagtcccgaatcccatataaaggcattgatgggtaaactggagtgc
tcaggtgattcctctctacagaatgctctagatcttgttcacggctatctgaaccaaatc
ccatcctatggtcatcgtgaagtcttaatcttgtattctgctctcagtacctgcgatcca
ggggatgtaatggagactgtccagaaatgcaagaaatccaaaataagatgttcagttgtt
ggtctttctgcagaaatttatatatgtaaacatatctgtcaagaaactggaggatcatat
acagtggcactggatgagtcacattttaaagagttgttattggaccatgctcctccacct
cctgcaatagcagaatttgctgttgctaatttgatcaagatgggcttcccacaaagagca
gcagagggtgttgtatctatatgtgcctgccacaaagaagccaaggttggtgggggctat
acatgtccaaggtgcaaagcacgtgtatgtgagctacctaccgaatgtcggatttgtggg
ttgactcttgtttcgtctccccatttggctaggtcatatcatcatctgtttcccataaca
ccatttgatgaggtgcctccctcccttttgaacaatccacagaaccagttaccaagaacc
tgttttggttgccggcagtctcttctccattctggaaataaatccagctttcgtgttgct
tgcccaaagtgcaaccagcacttttgccttgattgcgatatttatatccatgagagcttg
cataattgcccgggttgtgagagcctccgacgatcaaatgtaatgaattcaactaaagta
tga
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