Macadamia integrifolia (macadamia nut): 122070547
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Entry
122070547 CDS
T07436
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122070547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122070547
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122070547
Spliceosome [BR:
ming03041
]
Complex C
Other components
Step II factors
122070547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
IBR
OB_NTP_bind
DEAD
RRM_1
AAA_22
HA2_C
AAA_19
HA2_N
ResIII
ABC_tran
AAA_29
Helicase_RecD
T2SSE
SLS1_KH2
Motif
Other DBs
NCBI-GeneID:
122070547
NCBI-ProteinID:
XP_042490664
LinkDB
All DBs
Position
Unknown
AA seq
1604 aa
AA seq
DB search
MEELTERLKALFVKRVKSLLDGEEVKRWKKKLELTCDEIADVSASLKRYRSLVGFDELTL
KKKGLVTARELIAKRIREFRSAMNCILDYLNGLTLRGTSDETVEVLRLGGDFNWSRIHQI
MLREIRRLDEGLPIYASRKEILQEIHYQQVMVLIGETGSGKSTQLVQFLSDSGVGAEDSI
ICTQPRKIAAISLAQRVREESKGCYEDNLVTCYPTYSSTHSFDSKVVFMTDHCLLQHFMK
DKNLTNISCIIVDEAHERSLNTDLLLALLKELLKQRPGLRLIIMSATADADKLSDYFFGC
RTYHVVGRNFPVDIKYVPCASEGTSSISKAYSGACASYVSDVVNKVTEIHRTEEKGAILA
FLTSQMEVEWACENFQVPNVVALPLHGKLSNEEQSHVFHDYPGKRKVIYATNLAETSLTI
PGVKYVVDSGMVKESRFEPNTGMNVLKVCRVSQSSADQRAGRAGRTAPGKCYRMYSKNDF
QSMLSHQEPEICRVHLGVAVLRIFALGIKKVQEFDFVDAPTPKAIDMAIRNLIQLGAITL
KNDAFELTDDGRYLVKLGIEPRLGKLILAGIHHGLRKEGLVLAAVMANASNIFCRVGTDE
DKLKADRLKIQFCHQDGDLPTLLSVYKEWEDVSKERKNKWCWDNSINAKTMRRCKETVSE
LEHCLKSELNIIVPSYWVWDPRLSSGHDKNLKRVILSSLSENVAMYSGYDRLGYEVALTG
QHVQLHPSCSLLIYGWKPSWVVFGELLSISNQYLVCVTAFDFECLSTLCPPPLFNISNMN
SRKLQVSLMTGFGNVVLKRFCGKSNNNLLHLVSRIQTEMDRQIGIEVDVDKGKIQLFATA
EDMGKVSSLVNDALNYEMKWLKDECLEKCLYRGGSGVSPVALFGAGAEIKHLELDKRYLS
EDVFHSDAGTLDDKELLLTFEERASGNCSFHKYVCIGQDGEDSEKWGRITFLTPEAAEKA
VEELNGFEYRGSPLNISPSSISFGGDQKMFSXPAVNAKVFWPRRYSKGVAIIRCARQDVD
SIIDDCSCLPIGGRFVRCEHSNKNRDSIVMSGLDKETSEQEIFEILSTVTDRRILDVFLV
RGDTVTNLPSACEEAVLREIAPFMPTKSPSSNYCQVQVFQPEPNDYLMKAMITFDGRLHL
EAAKALQNLQGKVLPGCLPWQKIRCQQMFHSSVSCPAPVYSVIKKQLDSLFESFKHRDGV
FCNLERNENGSFRVKISANATKTVAELRKPLEQLMKGTTIKHASLTPSILQLLFNKDGIT
VFKSIQQETGTYILYDRQNMNVKVFGLQEKVAVAEQRLIQSLVSLHENKELEIRLRGEKL
PHNLMKALVEKFGPDLHGLKDKVPGAGFMLDTRRHVILVRGSKELKQKVEDIIFEFTKSL
SDNSPSEQLKGEGTCPICLCEVEDCYQLQGCAHLFCRSCLVEQCESAIKSHDGFPLCCTH
EGCGTPIFVTDMRSLLSSEKLEDLFRASLGAYVLASGGTYRFCPSPDCPSVYRVADPGTT
GGPFSCGACLVETCTRCHLEYHQYVSCERYKEFKDDPDLSLQEWCKGKEQVKGCPACGYT
IEKVEGCNHIECKCGRHICWVCLEFFSSGDKCYDHLRSVHQAII
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atggaagagctgacggaacgtctcaaagccctctttgttaaacgcgtcaagagtcttctg
gacggggaggaagtcaagcggtggaaaaagaagcttgagctcacctgtgatgagatagct
gatgtatctgcttcacttaaaaggtatcggagtttagttggttttgatgaacttacgttg
aagaaaaaggggcttgtcacagcaagggagttgattgcaaagaggatcagggaatttagg
tctgccatgaactgtatactggattatctcaatggattaactttacgaggaacttctgat
gagacggtcgaggttttaaggcttggtggtgatttcaattggagtcggattcatcagatt
atgttgcgggagattcggcgcctcgatgagggtttgcctatttatgcttcccggaaagaa
attcttcaggaaatacattatcaacaggtcatggtcttgattggagagactggttcagga
aagagtacgcagttggttcagtttctttctgattcaggagtaggagctgaagactccatt
atatgcactcagcctcgcaaaattgctgctatatccttggcacaaagggttagggaagaa
agcaaaggttgttatgaagataatttagttacttgttatccaacatactcatctacccac
agttttgattccaaggtagtttttatgacggaccactgtctactacaacacttcatgaag
gataaaaatttgactaatatttcatgcattatcgtagatgaggctcatgaaaggagcttg
aacactgatcttcttttggcgctgcttaaagagctgctgaagcagaggcctggtctaagg
cttatcataatgtctgcaactgctgatgcagataagctttcagattacttctttggttgt
aggacctaccatgttgtgggaagaaattttcctgttgacatcaaatatgttccttgtgca
tctgaaggaacttcttccatttcaaaagcttattctggtgcttgtgcttcatatgtttct
gatgttgtgaataaggtgactgagattcacagaacagaggaaaaaggggccatacttgca
tttttgacttctcagatggaagtggaatgggcttgtgagaattttcaggtccccaatgta
gttgcacttcccttacatgggaaactttctaatgaagagcaaagtcatgttttccatgac
taccctggaaagaggaaagtcatttatgccactaatttagctgagacatcattgactatt
ccgggggttaagtatgtagtagattctggcatggtcaaagagagcaggtttgaacccaac
actggtatgaatgtccttaaagtttgcagggttagtcaaagttctgctgatcaacgtgct
ggccgtgctggtcgaacagcacctggaaaatgttacagaatgtactcaaaaaatgatttt
cagtccatgctgtcacaccaggaaccagagatttgtagggttcatcttggtgttgcagtt
ctgaggatttttgctctgggaatcaagaaggtacaagagtttgattttgttgatgcacca
actcccaaggcaattgacatggcaataaggaatcttattcagttaggtgctattacatta
aaaaatgatgcttttgaattaactgacgatggtcggtatttggtaaaattgggtattgag
cctcgactgggaaaactgatccttgctggtatccatcatggtttgcgtaaagagggcctt
gttcttgctgcggtaatggctaatgcgagtaacattttctgcagagttggtactgatgaa
gataaattgaaagcagaccgtctgaagattcaattctgccatcaggatggggacctccca
acgctgctctctgtttataaggaatgggaggatgtgtccaaagaaaggaaaaataaatgg
tgctgggataacagcataaatgcaaagaccatgcggagatgtaaagaaactgtttctgaa
ttggaacattgccttaaaagtgaactaaatataattgtcccaagttactgggtctgggat
ccacgcctgtcctctgggcatgataaaaatctgaagagggtcatactgtcatccctttca
gaaaatgttgctatgtattctggatatgatcgacttggatatgaagtggccttaactgga
caacatgttcaactgcatccttcatgttcgttgctaatatatggttggaagccaagttgg
gtagtgtttggcgaactcctatcaatatcaaatcaatatttggtttgtgttactgctttt
gacttcgaatgcttgtctaccctttgtccccctcctttgttcaacatttcaaatatgaat
agccggaagctgcaggtgagtttgatgactggatttggcaatgttgtattgaaaagattc
tgtggtaaatcaaacaataacttgcttcatcttgtatcacgcattcaaacagaaatggac
agacagatcggtattgaagttgatgttgataagggaaaaattcaattgtttgccactgca
gaagacatgggaaaggtttctagtcttgtgaatgatgcattgaattatgaaatgaaatgg
ttaaaagatgaatgtctagagaaatgcttgtaccgtggtgggtccggtgtttctcctgtg
gctttgtttggagctggtgctgaaattaagcatttggaactggacaaaagatatttgtct
gaggatgtattccattcagatgcaggcactcttgatgataaggaacttcttttgactttt
gaagaaagggcatctggtaactgtagcttccacaaatatgtctgcattggacaggatggt
gaagacagtgaaaagtggggcaggataacatttcttactcctgaagctgctgaaaaagca
gttgaggagctaaatggttttgaatacagaggatctccactgaacatatccccttcctct
ataagctttggaggtgaccaaaaaatgttttcanttcctgctgtaaatgccaaggttttt
tggccacgtcgatatagcaagggtgttgcaatcattaggtgtgcaagacaagatgttgat
tctatcattgatgactgttcttgcttgccaattggtggtcggtttgttcgttgtgaacat
agcaacaagaacagggattctattgtcatgagtgggcttgacaaagaaacatctgaacaa
gaaatttttgaaattttgagtactgtaacagataggagaattctggatgttttcctggta
agaggagacactgttactaacctaccatctgcttgtgaagaagcagttcttagggaaatt
gctcccttcatgcctaccaagagcccctcaagcaattattgccaagtacaagtattccaa
cctgaaccgaatgattatttgatgaaagctatgataacttttgatggaagactgcatttg
gaggcagcaaaggctttgcagaatttacaggggaaggtactccccggctgtttaccatgg
cagaagatacgatgccaacagatgtttcatagctctgtatcctgtccagctcctgtttat
tctgttattaagaagcagctggattctttatttgagagcttcaagcatcgagacggtgta
ttctgcaatcttgaaaggaatgagaatggctcctttcgagtaaaaatatctgcaaatgct
acaaagactgtggcagagttaagaaagccattggagcagctgatgaaagggacaacaata
aagcacgctagtctcactccaagcatactacaacttctcttcaacaaagatggcattaca
gtctttaagtcaattcagcaagagacggggacatatatcctttatgataggcagaacatg
aatgttaaggtctttggtttgcaggaaaaagttgctgttgctgagcagagattgattcaa
tcccttgtaagcctccatgaaaacaaggaactggaaattcgcctgcgtggcgagaagctg
ccacacaacctgatgaaagcactggttgagaagtttgggccagacctacatgggctcaag
gataaagtacctggggctggattcatgcttgatactcgccgtcatgtcatattggtacgg
ggaagcaaggaattgaagcaaaaagtagaggacattatttttgaatttacgaagtctcta
agtgataattcgccatctgagcagctgaaaggagaaggaacatgccccatttgcttgtgt
gaggtcgaggactgttaccagcttcaaggctgtgcacacttgttttgccggtcttgcttg
gtggagcagtgtgaatctgcaattaaaagccatgatgggtttccactgtgctgcacccac
gaggggtgtggaacacccatttttgttaccgatatgaggagtctgttgtcaagtgagaag
ttggaagatctattcagggcttctttgggggcatatgtgctagctagtggtggtacctac
aggttttgtccatcaccggactgcccttcagtttatcgagtggcagaccctggaactact
ggtgggccattttcttgcggggcctgcctcgtggaaacatgcactaggtgtcacttggag
taccatcagtatgtgtcatgtgagaggtacaaggagttcaaggatgatccagatttgtca
cttcaggagtggtgcaaagggaaggaacaagtcaagggctgcccagcctgtggatacacg
atagagaaggtggagggatgcaatcacattgagtgcaagtgcgggaggcatatatgctgg
gtatgtctggagttctttagtagcggtgacaagtgctatgatcacctgcgatctgtacac
caagctataatatga
DBGET
integrated database retrieval system
