Macadamia integrifolia (macadamia nut): 122077315
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Entry
122077315 CDS
T07436
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03022
Basal transcription factors
ming03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122077315
09124 Replication and repair
03420 Nucleotide excision repair
122077315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ming03021
]
122077315
03400 DNA repair and recombination proteins [BR:
ming03400
]
122077315
Transcription machinery [BR:
ming03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122077315
DNA repair and recombination proteins [BR:
ming03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122077315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
122077315
NCBI-ProteinID:
XP_042499164
LinkDB
All DBs
Position
4:complement(27103018..27121069)
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AA seq
451 aa
AA seq
DB search
MPQVKIIAKNFMDMVAALPTLKLDKLYDNAFICEAVLRSLPPLAKKYVLQMLYIDVPITA
KLMEEWVLVEGLSKHKNAIDRLIQLRVFLETDRKKETSYVLNPKFQSNLQKYLMYGGVSP
REPMPASVTVRLPSLEDLDSYALEQWECFLLQLISPSQAGKPTNFSSSVMKVFQRGLLSQ
REKEAPRLTENGFQFLLMDTNAQLWYIIREYISNSEDRGVDPADLISFLLELSFHVAGEA
YNLNTLTDVQRNTFKDLADLGLVKLQHGRKESWFIPTKLATNLSVSLSDSSSRKQGFIVV
ETNFRLYAYSSSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAFQNGITAEQIISFLQ
QNAHPRVAERTPSIPENVTDQIRLWETDMNRVETTPAHFYDEFPSKEVFEAACDYARDNG
GLLWDDPKRMRLVVKAEIHMQMREFLRRQKQ
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtaaagatcattgcgaagaatttcatggacatggttgctgctttaccaacg
ttgaagctcgacaaactctatgataacgctttcatttgcgaagctgttctcaggtctttg
ccacctctcgctaagaagtatgttttgcaaatgttgtacatcgatgtcccaataactgca
aagttaatggaggagtgggtgcttgttgaggggctctctaagcataaaaatgcgatagat
cggttaattcaattaagagtatttcttgagactgacaggaaaaaagaaacgagttacgta
ttaaacccaaagtttcagagtaatcttcaaaagtatttaatgtatggtggtgtttcacct
agggaacccatgcctgcaagtgtcactgtgaggctcccaagtttggaggatctagactct
tatgcgcttgagcaatgggagtgcttcttgctgcaacttattagcccgtcccaagctgga
aagccaacaaacttcagctcttctgtgatgaaagttttccagcgaggtcttttaagtcag
agagagaaagaagctccaaggttgactgagaatggtttccagttcttgctgatggataca
aatgcacaactttggtacataatcagggaatacatctccaattctgaggatagaggtgtg
gatcctgcagatttgatttcgtttctgttggagcttagcttccatgtcgcaggcgaggcc
tataatttaaacaccttgactgatgtacaaaggaacacttttaaggatcttgcagacctg
ggactagtcaagcttcagcatggacggaaggagagttggttcattcctactaaattagcg
acaaatctttctgttagcttgtcagattcatcgtcacgcaaacagggattcatagttgtg
gagacaaactttaggctgtatgcttattcatcatctaagttacattgtgagattttgcgc
cttttctcaagggttgagtatcaacttccaaatcttatagttggagcaataacgaaagaa
agcttgtacagtgcatttcaaaatggcattacagctgagcagataatttctttccttcag
cagaatgcacatcctcgtgttgcagagagaactccatctattccagagaatgttacagac
cagattaggctgtgggaaactgacatgaacagagttgagacaactcctgcacatttctac
gatgaattcccctccaaagaggtttttgaagcagcttgtgattatgcaagagataatggt
ggattattatgggacgatccaaaaagaatgcgtcttgttgtcaaggcagagatacacatg
cagatgcgggagtttctccgtcgccaaaagcaatag
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