Macadamia integrifolia (macadamia nut): 122080121
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Entry
122080121 CDS
T07436
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122080121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122080121
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122080121
Spliceosome [BR:
ming03041
]
Complex C
Other components
Step II factors
122080121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_16
AAA_19
ABC_tran
cobW
nSTAND3
AAA_30
T2SSE
Sigma54_activ_2
SLFN-g3_helicase
Helicase_RecD
AAA_23
AAA_29
ATPase_2
NACHT
NB-ARC
DAP3
Flavi_DEAD
DUF4933
MMR_HSR1
SRP54
FtsK_SpoIIIE
Sigma54_activat
nSTAND1
Motif
Other DBs
NCBI-GeneID:
122080121
NCBI-ProteinID:
XP_042502946
LinkDB
All DBs
Position
5:complement(20631355..20659352)
Genome browser
AA seq
702 aa
AA seq
DB search
MATLPITQFEDKIIETVERNPVVVIIGETGSGKSTQLSQILHRKGYTKSGIVAVTQPRRV
AAVSVARRVSHELGVQLGEEVGYSIRFEDRTSERTRIKYLTDGVLLRESLSNPELHQYSV
IILDEAHERSLNTDILLGLMKRLVKMRSSNLKVLITSATLDGEKVSKFFSNCPIVTVPGK
LFPVEILYSKECPTSYIEASLKKALDIHVQEPEGDVLIFMTGQDDIEKLVKNLEERVQSL
EEGSCIDAVILPLHGSLPPEMQVRVFSPAPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSSGMYSLDIVQISRVQANQRAGRAGRTCPGKCYRLYPSSVYHEELPEVTVPE
IQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSRESLEDALKQLFLIDAIDENGSITDIG
RTMAELPLEPSLSRTLIEANKFGCLSQALTVAAMLSIETTLLPGQSKSTEKKRKHAPSDL
PDGSGWGDHIQLLQIFENWDLVDYDPRWCKDNDLQVRGMMFSKDVRKQLSQIMQKIAKGP
LDVQANQRWKETQQDYRSLRRALCVGYANQLAERMIHHNGYRTLGYKSQLVQVHPSSVLR
SDEDGMLANYVVYHELISTSRPFMRNVCGVEMSWVMPILKKLEKLDINKLSGGSGSSNER
SNGEEPLDLQKKKDGDVVKAPDDCDSRIQAARERFLARKGKK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcaactcttcctattactcaattcgaagataaaatcatcgaaaccgtggagcgaaac
ccagtcgttgtaataattggagaaactggttcaggaaagagtactcaactttctcaaata
ttgcacagaaaaggatataccaaatctggaatcgtcgcagtcacgcaaccacgccgagtc
gctgcagtctcagttgcaaggcgggtttcacatgagcttggtgtacagcttggtgaggaa
gttggttattccatacggttcgaggacaggacttcggaaagaacacgtattaaatacctt
actgatggagttcttcttcgtgaaagcctgtctaacccagaactacatcagtattcagta
attattttggatgaagctcatgaaaggagtctaaacactgacattttgctgggtttgatg
aaacgattggtgaagatgcgttcctctaatttaaaggttctgattacatcagcaactctg
gatggtgagaaggtgtcaaaattcttctccaattgtccaatagtgactgttccagggaag
ttattccctgtggaaatactatacagcaaagagtgtcctacaagctatattgaggcatct
ttaaaaaaagctcttgatatacatgtccaggaaccagaaggagatgtattaatattcatg
acaggacaggatgatatagagaagttggtaaaaaatttggaggagagggttcaaagcttg
gaggagggttcttgcattgatgctgtgattcttccacttcatggttctttaccacctgaa
atgcaggtacgagtgttcagtccagcacctccaaattgtaggcgatttattgttgccaca
aatattgcagaaacatccttaactgttgatggtgttgtgtatgtcattgattctggttat
gtgaagcaacggcaatataatccatcaagtgggatgtattctcttgacattgttcaaatc
agcagagtgcaggccaatcagcgtgctgggcgagctggaagaacctgtcctgggaagtgt
tatcgactatacccgtcctcagtttatcatgaagaattgccggaagtaacagtccctgaa
atacaacgctcttctcttgctggaagtgttctttacttgaaatcactggatctccccgat
attgatattctcaaatttgattttcttgatccaccttcacgtgagtcattggaagatgct
ttaaagcaattatttctcattgatgctattgatgaaaatggttcaattacagatattgga
cgaacaatggctgagcttccgttggaaccttcactttcaagaaccttaatagaggcaaac
aagtttggatgtttgtcccaggctttaactgttgctgcgatgttatccatagagaccaca
ttgcttcctggccaaagtaagagtactgagaagaagcggaaacatgctccgtcggacttg
ccagatggttcaggctggggtgatcacattcaattgctccaaatttttgagaattgggac
ctagtggactatgatccacgttggtgcaaagataatgacttgcaggttcgaggtatgatg
tttagcaaagatgtccggaaacagctatcacaaataatgcagaaaatagccaaagggcca
ctggatgtacaagcgaatcaaagatggaaagaaacacaacaggactacaggagtttgagg
agggccctgtgtgtgggttatgcaaatcagcttgctgagcggatgattcatcacaatggc
tatagaactctaggttacaagtcacaacttgttcaggtgcacccatcatcagtgctcaga
tccgatgaagatggaatgctagccaactatgttgtgtaccatgagcttatttctacctct
cgcccattcatgcgcaatgtctgtggtgtggagatgtcatgggtcatgcctattttaaag
aagcttgagaaactggatatcaacaagctcagtggcggatctggatcttccaacgagaga
tctaatggagaagaacctttggacttgcagaagaagaaagatggtgatgttgttaaggct
cctgatgattgtgacagtagaatacaggcagctagggaacgttttcttgctcgtaaggga
aagaaatag
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