Macadamia integrifolia (macadamia nut): 122081843
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Entry
122081843 CDS
T07436
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03013
Nucleocytoplasmic transport
ming03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122081843
03015 mRNA surveillance pathway
122081843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122081843
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122081843
5.6.2.5 RNA 5'-3' helicase
122081843
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122081843
mRNA cycle factors
Common to processing body (P body) and stress granule
122081843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
nSTAND3
UvrD-helicase
ATPase
SRP54
PhoH
AAA_16
AAA_22
AAA_25
AAA_32
Ribosomal_S13_N
AAA
Motif
Other DBs
NCBI-GeneID:
122081843
NCBI-ProteinID:
XP_042505127
LinkDB
All DBs
Position
6:21457750..21478972
Genome browser
AA seq
1275 aa
AA seq
DB search
MAAQTVVNNLYETASQPDTGGDAYTFLEFNTEGDEYDYPEFRELSQPIRSTVWPSASDSV
SDPSDRGADLQAESGVPISATPGSTSKGRGGGGSSSGGSSNQAAVDALAAGMSGLNFEET
GEDENYEYGKGNFTEHACKYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMN
WDLSQWCPLIDDRCFLPWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKP
GVDDEPHPVALKYEDAYQYQNVFAPLVKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIA
YFVFPKEDNELRLVPGDELRLRYPGDATHPAWQSVGHVIKLTVQEEVALELRASQGVPVD
VNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEAQVVRNTLPRRFG
APGLPELNASQVFAVKSVLQKPVSLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVQHLDTSEKSELHKLQQLKD
EQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQST
EPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPFRLQVQY
RMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFSGGPGIVPNDTFGSV
GSSNLNSDKRGGRAKGSYMPFGPPNGTHKPGLHPAGFPVPRIPLPPFPGGPHSQPYAIPT
RGAVHGPIGAIPQVPQAGSRGFGAGRGNAGGPIGGHLSHQGSQQSIGNIGSTFNFPALDN
PNSQPSVGGPLSQTGLMTQMPVQGLSQTFRDGFSIGGMSQDFLGDDFKSQGSHVAYNVAD
FSTQASQSGYGVDYVTQGAQAGFPGSFLNQNTQAGYSHLGTGNDFISQDYMPHGSQGLFT
QAGFNDPTQEDASQSHFGVAGPNQLQSQGLMNPLYSQPFTQYNSQPLNLQGPQQQQQPQQ
QGGQSSQNLKLHYNG
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcagacggttgtaaacaatctctatgagacggcttcacagcctgatacgggc
ggcgacgcttacacctttctcgagtttaatacggagggcgatgagtatgattatccggaa
ttccgagagctttcgcagccgatcaggtctacggtatggccttctgcgtctgattctgtc
tctgacccttctgaccgtggtgccgatctccaggccgagagtggcgttcctatctctgct
actcctggtagtacttccaagggtaggggtggtggtggtagcagcagcggcggaagtagt
aaccaggctgctgtggatgccctagcggcgggaatgagtggtctgaactttgaggagaca
ggtgaggacgagaattatgaatatggcaagggaaattttacggagcatgcttgtaagtac
tgtggggttcagaatccggcttgtgttgtgcgttgcaatgtgccttcttgtcgtaagtgg
ttctgcaactcgcggggaaacacttcggggtctcatatcgtcaatcacctggttcgagca
aagcacaaagaagtctgtcttcataaagacagtcctcttggagaaacaatacttgagtgc
tataactgtggttgccgaaatgtgtttctccttggatttatttctgccaagacagagagt
gtggttgttcttctctgtagggaaccatgtttgagtgtcaatgcattgaaggacatgaac
tgggacttgagtcagtggtgtccacttattgatgatcgctgtttcttgccgtggcttgtt
aagattccttctgaacaagaacagttgagagcacgccaaattagtgctcaacagataaac
aaggtggaagagctttggaagacaaaccctgatgccactcttgaagatcttgagaagcct
ggagtggatgatgaacctcatcctgtggccttaaagtatgaagacgcttatcagtatcaa
aatgtatttgcaccactcgtcaagctggaagctgattatgataaaatgatgaaagaatcg
caaagcaaagacaatgtcactatacgatgggatattgggcttaacaagaaacggattgca
tactttgtctttccaaaggaagataatgagttaaggcttgtacctggtgatgagttgaga
cttcgttatccaggggatgcaactcacccagcatggcagtcagtggggcatgtgatcaag
ttaactgtgcaagaggaagttgctcttgagctccgtgccagtcagggtgtacctgttgat
gtgaaccatgggtttagtgttgattttgtttggaagagtaccagctttgatcgaatgcag
ggagctatgaaaacttttgctgtggatgaaacaagtgtcagtggatacatctaccatcac
ttattgggacatgaagttgaggctcaggtggttcgtaatacattacctcggcgttttggt
gcaccaggacttccagaacttaatgcatctcaagtttttgctgtgaagagcgttcttcag
aagccagtaagtttaatacaagggccccctggtacaggaaaaacagtaacttctgctgcc
attgtttatcatatggcaaaacaaggccaaggccaggtcttggtttgtgctccaagtaac
gtggctgttgaccaacttgctgagaaaataagtgcaactgggttaaaggttgtcaggctt
tgtgctaaatcaagggaagctgtaagctctcctgttgagcatttaacgctgcactatcag
gtccagcatcttgatacttctgaaaaaagtgaacttcataaattgcagcaactgaaggat
gaacaaggagaactgtcgagcagtgatgagaagaagtacaaagccttgaaacgtgcaact
gaaagggagatatctcagagtgctgatgtcatttgttgcacgtgtgttggtgctggagat
cctcgtttgtcaaatttcagatttcgtcaggttcttattgatgaatccacccaatcaaca
gaacctgagtgtcttattcctctggtgcttggggttaagcaagtagttcttgttggagac
cattgtcagcttggtccagtcattatgtgcaagaaagctgctcgtgctgggcttgctcag
tctctttttgagcgccttgtgctccttggtgtgaagccatttagactgcaggttcaatat
cgtatgcatccatccctgtctgagttcccttctaatagcttctatgaaggaacacttcaa
aatggtgttaccataaatgaacggcaatcatcaggaatcgatttcccttggcctgtgcca
aatcgtcccatgttcttttatgttcagatgggacaagaggagatcagtgctagtggaact
tcttacttaaatagaacagaagctgcaaatgttgaaaaaattgtaaccacctttttgagg
agtggtgtcgtccctagtcagattggagttataacaccgtatgaagggcagcgggcatat
attgtgaactatatgtcaagaaatggtgctcttaggcagcaactctacaaggaaattgag
gttgcaagtgtggattccttccagggaagggagaaagactacatcattttgtcttgcgta
aggagcaatgagcatcagggcattggattccttaatgatccacgcagactaaatgtggca
cttacacgagctcgttacggcattgttatcttggggaatcctaaagtcttaagcaaacag
ccactgtggaatggtttattgacacactataaggagcatgaatgcttggtggaagggcct
ttgaataacctgaagcagagtatggtgcagtttcaaaagccaaagaagatctacaatgat
cgaaggcttttcttcagtggtggtccagggattgttcctaatgatacttttgggtcagtt
gggtcgtcaaacctaaattcagataaaagaggtggtcgcgctaaaggttcttacatgcct
ttcggtcctcccaatggaacacataaacctggactgcatcctgcagggtttcctgtgcct
agaattccacttcctccatttcctggtggtccccattctcagccatatgcaatcccaact
cgaggagctgttcatggaccaattggagccattccccaggtccctcaagctggaagcagg
ggttttggggctgggcgtggtaatgcaggtggtcctataggtggtcatctttcacatcaa
ggttcccagcaaagcatagggaatattgggtctacattcaactttcctgctctggacaat
ccaaacagtcagccatctgtcggtggtcccttgtcacaaactgggctcatgactcagatg
ccagtgcaagggctgagtcagactttccgtgatgggttttccattgggggcatgtctcag
gatttcttgggtgatgacttcaaaagccagggatctcatgttgcttataacgttgcggac
ttctccacacaggcttctcaaagtggctatggtgttgattatgttacacaaggagcacag
gctgggttccctggaagctttctcaaccagaatacccaggctggatattctcatttgggt
acaggaaatgatttcatttctcaggactacatgcctcatggatcacaaggcctatttaca
caggctgggtttaatgacccaacacaagaggatgcttcccagagccactttggtgtggca
ggtcccaaccaactccagtcacagggcttgatgaatcctctctactcccagcccttcacc
cagtacaacagtcagccactgaacctgcaaggtccacaacaacagcaacagccgcagcag
cagggtggccagagttcacaaaacctgaagctccactataatggctga
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