Macadamia integrifolia (macadamia nut): 122084089
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Entry
122084089 CDS
T07436
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122084089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ming03041
]
122084089
Enzymes [BR:
ming01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122084089
Spliceosome [BR:
ming03041
]
Complex A
U2 snRNP components
U2 related factors
122084089
Complex B
122084089
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
122084089
NCBI-ProteinID:
XP_042508070
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All DBs
Position
7:30471799..30477498
Genome browser
AA seq
1177 aa
AA seq
DB search
MDEVKHKSRREDSDRKEDSKRSHRDRDRDREDKERNEDRYKDKEKVRDRDSEKKDRESRR
SERERSVDDRYREKHRDKYREREKDRGRNRDEERERTKEKVKDREREKKDRETRERERER
EKEREDRDREREREDREKEREKEKERDRERERAREKEREREREREREEREREREERERER
ERERERERERTREREKRRELDRDEDRDGDDSREHERKRSRRDDDYRERERERSSRSDRHR
DDSDDNRRKRSEDDSENKEKRTREEDLEEEQRKLDEEMDKRRRRVQEWQELRRKKEESER
EKLGDTNADEPKSGKNWTLEGESDDEDAVPTLKSEKDTDMDEDGKPAGEGGDAMVVDSEN
GTAVAGTQNGGEGANGEEEIDPLDAFMNSMVLPEVKKLNGSESSSKADDKKSDPKKDQKD
GQSNGVQSKKGTNKAMGRIMPGEDSDSDYSDVETDEGQLEDEDDDEFMKRVKKTKVEKLS
IVDHSKIQYPPFRKNFYIEVKEISKMTAEEVADYRKQLELKIHGKDVPKPIRTWNQTGLT
SKMLDTIKKLNYDKPMPIQAQALPTIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV
VPGDGPIGLIMAPTRELVQQIHSDIKKFSKVLGVNCVPVYGGSGVAQQISELKRGAEIVV
CTPGRMIDILCTSSGKITNLRRVTYLVLDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS
ATFPRQVEILARRVLNKPVEIQVGGRSVVNKDITQLVEMRPESDRFLRLLELLGEWYEKG
KILIFVQSQEKCDSLFRDMLKHGYPCLSLHGAKDQTDRESTISDFKSNVCSILIATSIAA
RGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYSPDLVKALEL
SEQAVPADLKALADGFMAKVNQGIEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAREYGF
EEDKSDSDSDDDGIRKAGGDISQQAQAALAAISAASRVTVASMATPVSAAPLLPNGGLPV
SLPGVLGLGIPGTAAAVPGVALPIGPGDGAARAAAIAAAMNLQHNLAKIQADALPEHYEA
ELEINDFPQNARWKVTHKETLVPISEWTGAAITTRGQYYPPGKIAGPGERKLYLFIEGPT
EQSVKRAKAEVKRVLEDITNQSLSLPGTAQPGRYSVL
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagtgaaacacaaatccaggagagaagattctgaccggaaggaggattccaag
aggagccatcgggaccgtgaccgagatcgtgaggacaaggaaaggaatgaagacaggtac
aaagataaggagaaggtaagggatcgtgattccgagaagaaggacagagaaagtcggcgc
tcggagagggagaggagtgtcgatgacaggtatagggagaagcacagggacaagtacagg
gagagggagaaggatagagggcggaatcgagatgaggaaagagagaggacaaaagagaag
gtgaaagacagagagagggagaaaaaagatagggagaccagagaacgcgagagggaacgg
gagaaagaaagggaagacagagacagggagcgggagagggaggacagagagaaggagcgc
gagaaagagaaagagagagacagagagagggaacgggcaagagagaaggagagagaaagg
gaaagggaaagggaaagggaagaaagagagcgggagagggaggagagggaaagggaaagg
gaaagggaaagggaaagagaaagggagaggactagggagagggaaaagcgtcgggaactg
gatagagatgaggacagagatggtgatgatagcagggaacatgaaagaaagcggtctcgg
agggacgatgattatagggagagagaacgagaaaggagcagcagatcagataggcatagg
gatgacagtgatgataaccgaaggaaaaggagtgaggatgattctgagaacaaagagaag
agaacccgggaagaagatttagaggaagaacagaggaaacttgatgaggaaatggataag
aggaggaggagggttcaggaatggcaggaattgagaaggaaaaaggaggaatctgagaga
gaaaagctgggagatacaaacgctgatgaaccgaaatctggtaagaactggaccctagaa
ggtgagtctgatgacgaagatgctgttcctactttgaaatcagagaaggatacggacatg
gacgaagatggtaagccagctggtgaaggtggagatgctatggtggttgattcggaaaat
ggaactgctgtagctggtactcaaaatggaggtgaaggagccaatggggaggaggaaatt
gacccattggatgctttcatgaattcaatggtattacctgaggtcaagaagctgaatggc
tctgaaagttcctctaaagcggatgataaaaagtctgatcccaaaaaggatcagaaagat
gggcaaagtaatggggttcaatccaaaaagggtacaaataaagctatgggaagaattatg
cctggtgaggactctgattctgactacagtgatgttgagaccgacgaaggtcaacttgaa
gatgaagatgacgatgagttcatgaaaagggtgaagaagactaaggttgaaaaattatct
atagtcgaccactctaagatccagtatccccccttcaggaaaaatttctatattgaagtg
aaggagatttcaaagatgacagctgaggaggttgctgattacaggaaacaacttgagttg
aagattcatgggaaagatgtgccaaagcctattaggacatggaaccaaactggattgacg
agtaaaatgctggatactataaagaaactaaactatgataagccgatgcccatccaagct
caggcactgccaacaattatgagtggtcgagactgcataggtgttgcaaaaactggttct
ggtaagaccctgggttttgttttaccaatgttgaggcatatcaaggatcagccacctgtt
gttcctggagacgggcctattgggcttatcatggctcctactagagagcttgtccagcag
atccacagtgatatcaagaagttttcaaaggtgcttggtgttaattgtgtccctgtatat
ggtggctctggggttgctcagcagataagtgagttaaagcggggtgctgagattgttgtt
tgtactccaggtaggatgatagatatactttgtaccagtagtggaaagattactaatctc
cgaagggttacatatctagttttagatgaagcagatagaatgtttgacatgggttttgaa
cctcagattactcggattgtacaaaatatccgaccagaccgacagactgtacttttttct
gctacttttcctcgtcaagttgagatactggcccgcagagtattaaataagcctgttgaa
attcaggttgggggaaggagtgttgtgaacaaggatattacacagttggtggagatgaga
ccagagagtgataggttcctaagactgttagaactattgggagaatggtatgagaagggg
aagatattaatatttgtccagtcacaagaaaaatgcgattctttattcagggacatgcta
aagcatggttacccttgcctttcgcttcatggggcaaaagatcagactgatcgcgagtca
accatttctgacttcaagagcaatgtctgcagtattttgattgcaactagtatcgctgct
aggggcttggatgtgaaggagcttgaactggtaatcaattttgatgtcccgaaccactat
gaagactatgttcatcgtgtgggtaggacggggcgagctggccggaaaggctgtgctatt
acctttatctctgaagaggatgcaagatattctccggatcttgtaaaagctttggaactc
tcggagcaggctgttcctgctgatctgaaggctcttgctgatgggttcatggcgaaagtg
aatcagggaattgagcaggctcatggaactggttatggtggaagtggttttaagttcaac
gaagaggaagatgaagtgaggaaagctgctaagaaagcacaggcaagagaatatggtttt
gaggaagacaagtcagattcagactctgatgatgatgggattcggaaggccggaggggat
atctctcagcaagcacaagctgcacttgctgccataagtgcagcatccagggtaactgta
gcttcaatggcgaccccagtctcagcagccccgttgttgccaaatggaggattacctgta
tctctccctggtgtccttggtttgggtataccaggcacggctgcagcagtacctggggtg
gctctgcccattgggccaggtgatggagcagctcgagctgcggcaatagcagctgcgatg
aatctgcagcataatcttgcaaaaatccaggccgatgcactgcctgaacactatgaagca
gagttggagatcaatgatttccctcagaatgctcgttggaaggtgacccacaaggaaact
ttggtgccaatctcagaatggactggagctgctataactaccagggggcaatattatcca
ccaggtaagattgcaggacccggggagcggaagctttatttgttcattgaaggtccgact
gaacagtctgtaaagagggcaaaagcagaagtgaagcgtgttctggaggacattacgaat
cagtcactgtcactgcctggtactgcacagccgggcaggtactctgtactgtga
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