Microbacterium invictum: T9R20_07120
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Entry
T9R20_07120 CDS
T09642
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
minv
Microbacterium invictum
Pathway
minv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
minv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
T9R20_07120 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
minv03400
]
T9R20_07120 (mfd)
Enzymes [BR:
minv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T9R20_07120 (mfd)
DNA repair and recombination proteins [BR:
minv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
T9R20_07120 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WQB71719
LinkDB
All DBs
Position
1477126..1480746
Genome browser
AA seq
1206 aa
AA seq
DB search
MTIPGIVRALEQADSFREAVAAGAADAEYSVVEGLDAPLLASLLQRRRTAGKPAVLLAIA
PTGRRAETLGPALQALLPDAEVRHFPAWETLPHERLSPTPEIVGRRLDVLGRIARLHPDD
TLVVTASVRGAVQPLAAGLDAATPIELAVGERGHDLGQVAAQLVERAYHRVDMVSRRGEF
ALRGGILDVFPPTAEHPFRVEFFGDEVDQIRAFSVADQRSLPGEVAVVSLLASRELLLTE
AVRDRARELKDEFPGLRGMLEKMAEGIPVEGMESLMPAVVDQLVTLVDYFPRGTAVALVD
PERAIARATTLSDTNREFLDAAWNAATSGAESPIDLGAGDFVPLPRLREVVAERGGVWWS
LSSFDSGAADASAEGLLDVGDTGVARVAATSLPAFQGNVDGAISHVAERLRAGWRVVVMA
SGGGLVERARDVLAERGLAARRVESIEDLPEPGVAQVVACSLERGFEVAEAQLSVITESE
FYGRTIGGDARVVKKLASRRRNVVDPLQLKTGDHVVHATHGIGRFIELTQREVSSGGRNA
VKSVREYLVLEYAPSKRGYPGDKLFVPTDQLDLLSKYVGGEAPTLSKMGGSDWAQAKGRA
RKAVRDIAVELVKLYSARMAARGHAFGPDTPWQRELEEAFPFAETPDQLQTIDEIKADME
KPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFTERFAGFP
VKVRALSRFQTDKQAKEIVAGLADGTIDMVIGTHRILTERVVFKDLGLMIIDEEQRFGVE
HKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTYVGARNDKQ
ITAAIRRELLREGQVFYVHNRVSSIQRVAAHLAELVPEARVVVAHGQMGEHQLEQVVDDF
WERRADVLVCTTIIETGLDIANANTIIIDRADKYGLSQLHQLRGRVGRARERAYAYFLYD
ENKPLSETAADRLETIAVNNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLYLR
MIGEAVATFRGEDTEGPTELRLELPVQARLPEEYIDSERLRLEAYQKLSAAATPTAVSRD
ADGRDPIDAVIDELRDRYGEPPAEVDGLVAVARLRRRAARAGLTDVVAMGPNLRIAPADL
PDSMRVRLQRLHPKAKLLAGGEALVVPLPRAGDAPLGDAELLAWVEQLLTQLWPDATVDA
AAPATA
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
gtgacaattcccgggatcgtgcgcgccctcgagcaggctgactccttccgggaggcggtg
gccgccggcgcggccgacgccgagtactcggtggtcgaggggctggacgcgccgttgctc
gcgtccctcctgcagcggcgacgcaccgccggcaagcccgcggtgctgctggccatcgct
cccaccggccgccgggccgagaccctcgggccggcactgcaggcgctccttcccgacgcc
gaggtgcgtcacttccccgcgtgggagacgctgccgcacgaacggctgagtccgacgccc
gagatcgtcggccgtcggctcgacgtcctcggccgtatcgcgcgtctgcacccggacgac
acgctcgtcgtcaccgcctcggtgcgcggggcggtgcagccgctggccgcggggctcgat
gcggccaccccgatcgaactcgcggtcggcgagcgcggccatgacctggggcaggtggcc
gcgcaactggtcgagcgcgcctaccaccgggtggacatggtgtcgcggcgcggcgagttc
gccctgcgcggcggcatcctcgacgtcttccctcccaccgccgagcacccgttccgagtc
gagttcttcggggacgaggtcgatcagatccgagcgttctcggtggcggatcagcgctcc
cttcccggcgaggtggccgtggtgagtctcctggcgagccgcgagcttctcctgaccgag
gccgtccgcgaccgggcgcgggagttgaaggacgagttcccgggcctgcgcggcatgctc
gagaagatggccgagggcatccccgtcgaggggatggagtcgctgatgccggccgtggtg
gaccagctcgtcacgctggtggactatttcccccggggaacggcggtcgccctggtggac
cccgagcgggcgatcgcgcgtgccaccacgctgagcgacaccaaccgcgagttcctggat
gccgcatggaacgccgcgacgtcgggagccgagtctcccatcgatctgggcgccggcgac
ttcgtgccgcttccgcgcctccgcgaggtcgtcgccgagcgcggcggcgtgtggtggagc
ctcagctccttcgattcgggggcggccgatgcctcggccgaaggactgctggatgtcggc
gacaccggcgtcgcgcgcgtggcggcgacctccctccccgccttccaggggaatgtcgac
ggcgcgatcagccatgtcgcggagcgactgcgcgccgggtggcgggtcgtggtcatggcc
tcggggggtgggctcgtcgagcgtgcccgcgatgtcctcgccgagcggggcctggccgcg
cggcgggtggaatcgatcgaggatctgcccgaacccggcgtcgcccaggtggtcgcgtgc
tcgctcgagcgcggattcgaggtcgccgaagcacagctgtcggtgatcaccgagtcggag
ttctacggccgcaccatcggcggcgacgcgcgggtcgtcaagaagctcgcctcgcgccgg
cgcaacgtggtggacccgcttcagttgaagaccggcgatcacgtcgtccatgccactcac
ggcatcgggcgtttcatcgagctcacccagcgcgaggtgtccagcggcggacgcaacgcc
gtcaagagcgtccgggagtacctggttctcgagtacgcgccctccaagcgcggttacccc
ggcgacaagctcttcgtgcccaccgatcagctcgacctgctgtcgaagtacgtcggcgga
gaggctcccacgctgtcgaagatgggcgggagcgactgggcgcaggcgaagggacgtgcg
cgcaaggcggtccgcgacatcgcggtggagctggtcaagctctactccgcgcggatggcg
gcgcgcggtcacgccttcggacccgacaccccctggcagcgcgagctcgaggaggccttc
ccgttcgccgagacgcccgatcagctgcagacgatcgatgagatcaaggccgacatggag
aagccgatcccgatggacaggctgctctcgggcgatgtcggattcggcaagaccgaggtc
gcggtgcgtgccgccttcaaggccatccaggacggcaagcaggtcgcgatgctcgtgccc
acgaccctcctggtcaaacagcacctcgagaccttcaccgagcgcttcgccgggttcccc
gtgaaggtgcgggcgctgtcgcgattccagacagacaagcaggccaaggagatcgtcgcg
ggcctggccgacgggacgatcgacatggtcatcgggacgcaccgcatcctcaccgagcgc
gtggtcttcaaagacctggggctgatgatcatcgacgaggagcagcggttcggcgtcgaa
cacaaggacgcgctgaagaagctcaagaccaacgtcgacatcctcgcgatgagcgcgacc
ccgatcccgcgcacgctcgagatggcggtgaccgggatccgcgagatgtcgaccctcgcg
acaccgcccgaggaccggcatccgatcctcacctacgtcggagcccgcaacgacaagcag
atcacggcggcgatccgtcgggagctgctgcgcgaggggcaggtgttctacgtgcacaac
cgggtctcgtcgatccagcgggtggccgcccacctcgccgagctcgtgcccgaggcccgt
gtcgtcgtggcgcacggccagatgggcgagcatcagctcgagcaggtcgtagacgatttc
tgggagcgccgcgcggacgtcctggtgtgcacgacgatcatcgagaccgggctcgacatc
gccaatgccaacacgatcatcatcgaccgggccgacaagtacgggctgtcgcagctgcac
cagctccgcgggcgcgtgggtcgcgcacgcgagcgcgcatacgcgtacttcctctacgac
gagaacaagccgctgtccgagaccgccgccgatcggctggagacgatcgcggtgaacaac
gatctcggcagcggcatgcaggtggcgctgaaagacctcgagctgcgcggcgcagggaac
ctcctcggcgcggagcaggccggtcacatcgccggcgtcggcttcgacctctacctccgc
atgatcggtgaggccgtggcgaccttccgcggcgaggacaccgaggggccgaccgagctc
aggctcgagctgcccgtgcaggcgcgtctgcccgaggagtacatcgacagcgagcggctg
cggctggaggcctaccagaagctctccgccgccgcgacgccgaccgcggtctcgcgcgac
gcggatggccgcgatccgatcgacgcggtgatcgacgaactgcgcgatcgctacggcgag
ccgcccgcagaggtcgacggactcgtcgccgtcgcccgactgcgtcgcagggcggcacgt
gcgggtctcaccgacgtggtcgcgatggggccgaatctgcgtatcgcgccggcggacctc
cccgactcgatgcgggtgaggctccaacgcctgcaccccaaggccaagctcctcgccggc
ggcgaagcgctggtcgtcccgcttcctcgcgcgggggacgccccgctcggggatgccgag
ctgctggcgtgggtcgagcagctgctcacgcagctgtggcccgacgcgacggtcgacgcg
gcggccccggcgacggcctga
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