Microbacterium sp. No. 7: AOA12_07860
Help
Entry
AOA12_07860 CDS
T04102
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mio
Microbacterium sp. No. 7
Pathway
mio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AOA12_07860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mio03400
]
AOA12_07860
Enzymes [BR:
mio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOA12_07860
DNA repair and recombination proteins [BR:
mio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AOA12_07860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
TRCF
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
DUF3638
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ALJ19825
UniProt:
A0A0P0DND6
LinkDB
All DBs
Position
1698591..1702187
Genome browser
AA seq
1198 aa
AA seq
DB search
MTVPGIVRALTQAESFREAVDAGIVDADLSAPPGLIAPLLAGLVARRAAAGNPATLLVVA
PTGRRAESIGQALSSLVDGATVLDFPAWETLPHERLSPSAETIGRRIDVLRRAAAWDGEH
PLIVTASVRSALQPVAAGLADAAAIELAAGSRGHDLADVARRLVELAYHRVDMVSRRGEF
AVRGGILDVFPPVADHPYRIEFFGDEVDQIRAFSVADQRSLPGDVPGVTLIPSRELLLTD
EVRTRALELQERLPGLSGMLEKMSEGIPVEGMESMLPVLADGVVPLIDYLPRGTATALVD
PERAVTRALTLGETNREFLEAAWSAATAGGERPVDASTMLAAGLDGGDFLTLPALREAAH
ERGGVWWTLSAFDPGADDEAGGHGGALRVDASAVPSFHGNVEGAVDHVAGLLRDGWRVVV
AAGGTGLVDRARDVLAERELAVRVAERLDEPAEPGVAIAVAARLEAGFQLDEAKLAVLTE
GEFYGRTIGGDGRVVKKLASRRRNVVDPLQLKPGDFVVHSTHGIGKFVELVQREVSMGGR
NAVKTQREYLVLEYAPSKRGYPGDKLFVPTDQLDLLSRYVGGEAPALSRMGGSDWAAAKG
RARKAVRDIAVELVKLYSARMASKGHAFGPDSPWQRELEEAFPFAETPDQLQTIDEIKAD
MERPIPMDRLLSGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFAERFAG
FPVKVRPLSRFQTDKEARETIAGLLDGSVDMVIGTHRILTEKVVFKDLGLMIIDEEQRFG
VEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLQTPPEDRHPILTYVGARND
KQVAAAIRRELLREGQVFYVHNRVQSIQRVAAQLAELVPEARIAVAHGQMGEHQLEQVVD
DFWERRADVLVSTTIIETGLDISNANTIVIDRADKYGLSQLHQLRGRVGRGRERAYAYFL
YDENKPLSETAADRLETIAVHNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLY
LRMIGEAVATFRGEDAEGPAELRLELPVEARIPESYIDSERLRLEAYQKLSAAASVTASD
EAIALVTEELHDRYGAPPAEVEGLFAMARLRRRAAQAGLTDVVAMGPNLRVAPAHLPDSM
RVRLQRLHPKSKILAAGEAMIVPLPTAGGELVTGADLIAWTAQLLDQLWPVAPVVAPA
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
gtgacagttcccgggatcgtgcgcgccctcacgcaggcagagtcgtttcgggaggcggtg
gatgccggcatcgtcgatgccgatctgtcggctccgccgggactcatcgccccgctgctg
gcgggcctcgtcgcgcgccgcgccgccgcggggaatcccgcgacgctgctcgtcgtcgcc
cccaccgggcgccgcgcggagtcgatcggacaggcgctgtcgagcctcgtcgacggggcc
acggtgctcgacttccccgcgtgggagacgctgccgcacgagcggctgagccccagcgcc
gagacgatcggacgccgcatcgacgtgctgcgccgcgccgcggcgtgggacggcgagcat
ccgctcatcgtgacggcgtcggtgcgcagcgcgctgcagcccgtcgccgcgggcctcgcc
gacgccgcggccatcgagctcgcggcgggctcgcgcggccacgacctcgccgacgtcgcc
cgccggctcgtcgagctggcctaccaccgcgtcgacatggtgtcgcggcgcggcgagttc
gcggtgcgcggcggcatcctcgacgtcttcccgcccgtcgccgaccacccgtaccgcatc
gagttcttcggcgacgaggtcgaccagatccgcgccttctcggtcgccgaccagcgctcg
ctgccgggcgacgtgccgggcgtgacgctcatccccagtcgtgagctgctgctcaccgac
gaggtgcgcacccgcgccctcgagctgcaggagcggctgcccggcctgagcggcatgctc
gagaagatgagcgagggcatccccgtcgaggggatggagtcgatgctgcccgtgctcgcc
gacggcgtcgtgcccctcatcgactatctgccgcgggggaccgcgaccgcgctcgtcgac
cccgagcgcgccgtgacgcgcgcgctcacgctcggcgagacgaaccgcgagttcctcgag
gccgcctggagcgccgcgaccgcgggcggcgaacgtcccgtcgacgcgtcgacgatgctc
gcggcgggcctcgacggcggcgacttcctcaccctgcccgcgttgcgcgaggccgcgcac
gagcgcggcggcgtgtggtggacgctcagcgccttcgacccgggcgccgacgacgaggcc
ggcggccacggcggcgccctgcgggtcgacgcgtcggcggtgccgtcgttccacggcaac
gtcgagggcgccgtcgaccacgtcgccgggctgctgcgcgacggctggcgggtcgtcgtc
gccgccggcggcacgggtctcgtcgaccgcgcgcgcgacgtgctcgccgagcgcgagctg
gccgtgcgggtcgccgagcggctcgacgagcccgccgagccgggcgtggcgatcgccgtc
gccgcacggctggaggcgggcttccagctcgacgaggcgaagctcgcggtgctcaccgag
ggcgagttctacgggcgcacgatcggcggcgacggccgcgtcgtcaagaagctcgcgtcg
cgtcggcgcaacgtcgtcgacccgctgcagctcaagccgggcgacttcgtcgtgcactcc
acgcacggcatcggcaagttcgtcgagctcgtgcagcgcgaggtgtcgatgggcgggcgc
aacgccgtcaagacgcagcgcgaatacctcgtgctcgagtacgcgccgtcgaagcgcggc
tacccgggcgacaagctcttcgtgccgaccgaccagctcgacctgctcagccgctacgtc
ggcggcgaggcgcccgccctgtcgaggatgggcggcagcgactgggccgccgcgaagggc
cgtgcgcgcaaggccgtgcgcgacatcgccgtcgagctcgtcaagctctactcggcacgc
atggcgtcgaagggccacgcgttcggccccgacagcccgtggcagcgcgagctggaggag
gcgttcccgttcgccgagacgcccgaccagctgcagacgatcgacgagatcaaggccgac
atggagcgccccatccccatggaccggctgctgtcgggcgacgtcggcttcggcaagacc
gaggtcgccgtgcgcgccgcgttcaaggcgatccaggacggcaagcaggtcgccatgctc
gtgccgacgacgctgctcgtcaagcagcacctggagacgttcgccgagcggttcgcgggc
ttccccgtcaaggtgcggccgctgtcgcggttccagaccgacaaggaggcgcgcgagacg
atcgcggggctgctcgacggctccgtcgacatggtcatcggcacgcaccggatcctcacc
gagaaggtggtcttcaaggacctggggctcatgatcatcgacgaggagcagcgcttcggc
gtcgagcacaaggacgcgctcaagaagctcaagacgaacgtcgacatcctcgcgatgagc
gcgacgccgatcccgcgcaccctggagatggcggtcaccggcatccgcgagatgtccacg
ctgcagacgccgccggaggaccggcatccgatcctcacctacgtcggcgcgcgcaacgac
aagcaggtggccgcggcgatccgtcgcgagctgctgcgcgagggccaggtgttctacgtg
cacaaccgcgtgcagtcgatccagcgcgtcgccgcgcagctcgccgagctcgtgcccgag
gcgcgcatcgccgtcgcgcacgggcagatgggcgagcaccagctcgagcaggtcgtcgac
gacttctgggagcggcgcgccgacgtgctcgtctcgacgacgatcatcgagaccggcctc
gacatctcgaacgccaacacgatcgtcatcgatcgcgccgacaagtacgggctcagccag
ctgcaccagctgcgcggccgcgtcggccgaggccgcgagcgcgcgtacgcgtacttcctg
tacgacgagaacaagccgctgagcgagaccgccgccgaccggctggagacgatcgccgtg
cacaacgacctcggcagcggcatgcaggtcgctctcaaggacctcgagctgcgcggcgcc
ggcaacctgctgggggccgagcaggcggggcacatcgcgggcgtcggcttcgacctgtat
ctgcggatgatcggcgaggcggtcgcgacgttccgcggcgaggatgccgagggtcccgcc
gagctgcgcctggagctgcccgtcgaggcgcgcatcccggagagctacatcgacagcgag
cgcctgcggctggaggcgtaccagaagctgtcggcggcggcatccgtcaccgcgtccgac
gaggcgatcgcgctcgtcaccgaggagctgcacgaccgctacggcgcgccgcccgcggag
gtcgagggactcttcgcgatggcgcgcctgcgtcgccgtgccgcgcaggcgggtctcacc
gacgtcgtcgcgatgggcccgaacctgcgcgtcgcgccggcgcacctgcccgactcgatg
cgcgtgcgcctgcagcgcctgcacccgaagtcgaagatccttgcggcgggcgaggcgatg
atcgtgccgctgcccaccgcgggcggcgagctcgtcacgggcgccgacctcatcgcgtgg
accgcgcagctgctcgaccagctctggcccgtcgcacccgtcgtcgcccccgcgtaa
DBGET
integrated database retrieval system
