Microbacterium sp. PAMC 28756: AXH82_11645
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Entry
AXH82_11645 CDS
T04312
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mip
Microbacterium sp. PAMC 28756
Pathway
mip03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mip00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AXH82_11645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mip03400
]
AXH82_11645
Enzymes [BR:
mip01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AXH82_11645
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AXH82_11645
DNA repair and recombination proteins [BR:
mip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AXH82_11645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
zf-TFIIB
Ribosomal_S13
NFACT_N
Zn_Tnp_IS1595
Motif
Other DBs
NCBI-ProteinID:
AMG83971
LinkDB
All DBs
Position
complement(2449542..2450405)
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AA seq
287 aa
AA seq
DB search
MPEMPEVEGLVAFLGERTTGRTITRASVAAIAALKTYDPPISALEGAAITGAERRGKFVV
LCCGSELHLVFHLAKAGWLRWYDTLPTTLLKPGKSPIALRIALDDGSGFDLTEAGTKKSL
AVYVVRDPAEVPGIARLGPDPLDPSFTRDAFAALLDDRRMQIKGLLRDQGVIAGIGNAYS
DEILHAARMSPYAIAGTLDDAEIDRLFAAMQETLAEAVAAAAGKPPADLKDAKRRGMRVH
ARRGEACPVCGDEVRSVFFADRSLEYCPTCQTGGKVLADRRLSRLLK
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagatgccggaggtcgaaggactcgtcgcgttcctcggcgagcgcaccaccgga
cgcacgatcacccgtgcctccgtggccgcgatcgccgcgctcaagacctacgacccgccg
atctcggcactggaaggcgcggcgatcaccggcgcggagcgccgcggcaagttcgtggtg
ctgtgctgcgggtccgagctgcacctcgtcttccacctggcgaaggccggatggctgcgc
tggtacgacactctgccgaccacgctcctcaagccgggcaagtcgcccatcgcgctgcgg
atcgccctcgacgacggcagcggcttcgacctgaccgaggccgggacgaagaagtcgctg
gccgtgtacgtggtccgcgaccccgccgaggtgcccggcatcgctcggctcggccccgac
ccgctcgatccgtccttcacgcgcgacgccttcgccgcgctgctggacgaccgtcggatg
cagatcaaggggctgctccgcgaccagggcgtgatcgcgggcatcggcaacgcctactcg
gacgagatcctgcacgcggcccgcatgtcgccgtatgcgatcgccggcacgctggacgac
gccgagatcgaccgcctgttcgcggcgatgcaggagaccctcgccgaggccgtcgcggcc
gccgcgggcaaacctccggctgatctcaaggacgccaagcgccgcggcatgcgggtgcac
gcccgccggggcgaggcgtgcccggtctgcggcgatgaggtgcgcagcgtgttcttcgcc
gaccgctccctggagtactgccccacctgtcagaccggcggcaaggtgctcgccgatcgg
cggctctcccgcctgctcaagtga
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