Micromonas commoda: MICPUN_55769
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Entry
MICPUN_55769 CDS
T02695
Name
(RefSeq) predicted protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
mis
Micromonas commoda
Pathway
mis03022
Basal transcription factors
mis03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MICPUN_55769
09124 Replication and repair
03420 Nucleotide excision repair
MICPUN_55769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mis03021
]
MICPUN_55769
03400 DNA repair and recombination proteins [BR:
mis03400
]
MICPUN_55769
Transcription machinery [BR:
mis03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MICPUN_55769
DNA repair and recombination proteins [BR:
mis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MICPUN_55769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
TF_Zn_Ribbon
Motif
Other DBs
NCBI-GeneID:
8240966
NCBI-ProteinID:
XP_002500262
JGI:
MicpuN3_55769
UniProt:
C1DZ00
LinkDB
All DBs
Position
2:complement(join(1609184..1609422,1609466..1609747,1609815..1610066,1610141..1610198,1610315..1610700,1610788..1610854))
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AA seq
427 aa
AA seq
DB search
MYEPDDEDLAAEEQAASLKVACPERTWEDLEEDETGRLRITHGDKQYREKRRKIAMAAAN
SHVCKGMIRFLYVVVDLSQAVNEADMRPSRLAVVSGILYKFFREYFNQNPLSQLGLVVTR
NGIAERLTELSGSPESHITALKENLEAAGDMSIQNSLEQVQSSLAQLPTYGTREVLFVVS
ALSSCDPGNVHTAIAAAKSANIRVSVVSVAAELHICRRMTEETGGMFGVSQSQHHLEDLL
MAHAPPPPLNEQATKASLVEMGFPQKRPLDKGAFFSGRGGEYVCPRCASRVEVNPTHPKF
VENIKINNPVTFLQELPAQCSVCSLTLVSSPHLARSYHHLFPVAPFEVHRPVIMQELNDA
AKLDATNCFACNLKFDRSGARGNDDAPSVCPRCKKIYCFQCDVFIHEKLHNCPGCEIDKA
KGYKNSA
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagccagacgacgaggacctcgccgcagaggagcaggcggcttccctgaaggta
gcctgccctgagaggacttgggaagacttagaagaggatgagactggtaggctgcgcatc
acgcatggagacaagcaatacagagagaaacgcaggaagatcgcgatggcggcggcgaac
tcgcacgtttgcaaggggatgattaggttcttatacgtggtggttgacctctctcaggca
gtcaacgaggcggacatgaggccatcgcgcctcgctgtcgtctcggggatcttgtacaag
ttctttagagagtatttcaaccagaatccgctcagccaattgggcctagtggtgactcgc
aacggcatcgcagagcgcttgacggagctcagcggcagcccggagtcccacatcacagcg
cttaaggagaacttggaagctgcaggagacatgtccatccagaactccttggaacaagtg
caatcatcccttgcacagcttcccacctacggtactcgagaagttctcttcgtcgtgtcc
gccctctcctcatgcgacccgggaaacgttcacacggcaattgctgcagcgaagagtgca
aacataagggtcagcgtggtttcggtcgcagcggagttgcacatttgccgccgcatgacc
gaggaaaccggtgggatgtttggagtgtcccagtctcagcatcatctcgaagatttgctc
atggctcatgctccccctccaccgttgaacgagcaggcgacaaaggcaagtttggttgaa
atgggatttccacaaaaacgaccactggacaaaggcgcatttttctctgggcgaggcgga
gagtacgtatgccctcgatgtgcatcgagagttgaggtgaatccaacacatccaaaattt
gtggagaacatcaaaataaataaccctgtcacatttttgcaggaattgcctgctcagtgc
agcgtctgctctttgacgctggtttcatcacctcatcttgcacgatcatatcaccatctt
tttccggtcgcaccattcgaggttcatcgtcccgtgattatgcaggagctaaatgacgcg
gccaaacttgatgcgactaactgctttgcgtgtaatttgaaatttgaccgctccggtgca
aggggaaacgacgatgcaccgtcagtttgcccgagatgcaaaaaaatatattgcttccag
tgcgacgtgttcatacacgaaaaattacacaactgcccgggttgcgagatagataaagca
aaaggatacaaaaatagtgcctga
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